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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Test | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.8, "3.10", 3.12] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: python -m pip install flake8 pytest python-dateutil setuptools codecov pyflakes numpy cython astropy healpy | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Install package | |
| run: python -m pip install . | |
| - name: Test with pytest | |
| run: | | |
| python -c 'import pandas, nwaylib, nwaylib.progress' | |
| coverage run setup.py test | |
| - name: pyflakes | |
| run: | | |
| pyflakes *.py nwaylib/*.py | grep -vE '(may be undefined|imported but unused|unable to detect undefined names|local variable ._|list comprehension redefines)' | tee static_errors | |
| cat static_errors | |
| if test -s static_errors; then exit 2; else true; fi | |
| - name: API test | |
| run: coverage run -a nway-apitest.py | |
| - name: submit coverage results | |
| run: codecov | |
| - name: nway-write-header | |
| run: | | |
| echo "backend: Agg" > matplotlibrc | |
| cd doc/ | |
| echo "backend: Agg" > matplotlibrc | |
| nway-write-header.py COSMOS_OPTICAL.fits OPT 2 | |
| nway-write-header.py COSMOS_IRAC.fits IRAC 2 | |
| nway-write-header.py COSMOS_XMM.fits XMM 2 | |
| - name: creating offset catalogues | |
| working-directory: doc | |
| run: | | |
| nway-create-fake-catalogue.py --radius 20 COSMOS_XMM.fits COSMOS_XMM-fake.fits | |
| test -e COSMOS_XMM-fake.fits | |
| nway-create-shifted-catalogue.py --radius 40 --shift-ra 60 COSMOS_XMM.fits COSMOS_XMM-shift.fits | |
| test -e COSMOS_XMM-shift.fits | |
| rm -f COSMOS_XMM-shift.fits | |
| nway-create-shifted-catalogue.py --radius 40 --shift-dec 60 COSMOS_XMM.fits COSMOS_XMM-shift.fits | |
| test -e COSMOS_XMM-shift.fits | |
| - name: 2 catalogue match | |
| working-directory: doc | |
| run: | | |
| nway.py COSMOS_XMM.fits :pos_err COSMOS_OPTICAL.fits 0.1 --out=example2.fits --radius 20 | |
| test -e example2.fits | |
| nway.py COSMOS_XMM-shift.fits :pos_err COSMOS_OPTICAL.fits 0.1 --out=example2-offset.fits --radius 20 | |
| test -e example2-offset.fits | |
| # 2 catalogue match, with magnitudes | |
| - name: 2 catalogue match, with magnitudes | |
| working-directory: doc | |
| run: | | |
| nway.py COSMOS_XMM.fits :pos_err COSMOS_OPTICAL.fits 0.1 --out=example2-mag.fits --radius 20 --mag OPT:MAG auto --mag-radius=4 | |
| test -e example2-mag.fits | |
| test -e OPT_MAG_fit.pdf | |
| test -e OPT_MAG_fit.txt | |
| nway.py COSMOS_XMM-shift.fits :pos_err COSMOS_OPTICAL.fits 0.1 --out=example2-mag-offset.fits --radius 20 --mag OPT:MAG OPT_MAG_fit.txt | |
| test -e example2-mag-offset.fits | |
| - name: 3 catalogue match | |
| working-directory: doc | |
| run: | | |
| nway.py COSMOS_XMM.fits :pos_err COSMOS_OPTICAL.fits 0.1 COSMOS_IRAC.fits 0.5 --out=example3.fits --radius 20 | |
| test -e example3.fits | |
| nway.py COSMOS_XMM-shift.fits :pos_err COSMOS_OPTICAL.fits 0.1 COSMOS_IRAC.fits 0.5 --out=example3-offset.fits --radius 20 | |
| test -e example3-offset.fits | |
| - name: 3 catalogue match, with magnitudes | |
| working-directory: doc | |
| run: | | |
| nway.py --radius 20 COSMOS_XMM.fits :pos_err COSMOS_OPTICAL.fits 0.1 COSMOS_IRAC.fits 0.5 --mag OPT:MAG auto --mag IRAC:mag_ch1 auto --mag-radius 4 --out=example3-mag.fits | |
| test -e example3-mag.fits | |
| test -e IRAC_mag_ch1_fit.pdf | |
| test -e IRAC_mag_ch1_fit.txt | |
| nway.py COSMOS_XMM-shift.fits :pos_err COSMOS_OPTICAL.fits 0.1 COSMOS_IRAC.fits 0.5 --out=example3-mag-offset.fits --radius 20 --mag OPT:MAG OPT_MAG_fit.txt --mag IRAC:mag_ch1 IRAC_mag_ch1_fit.txt | |
| test -e example3-mag-offset.fits | |
| - name: nway-explain | |
| working-directory: doc | |
| run: | | |
| nway-explain.py example3.fits 422 | |
| - name: cutoff calibration | |
| working-directory: doc | |
| run: | | |
| nway-calibrate-cutoff.py example2.fits example2-offset.fits | |
| test -e example2.fits_p_any_cutoffquality.pdf | |
| test -e example2.fits_p_any_p_i.pdf | |
| nway-calibrate-cutoff.py example3-mag.fits example3-mag-offset.fits | |
| ls | |
| - name: test elliptical errors | |
| working-directory: tests/elltest | |
| run: | | |
| nway.py --radius=10.0 randomcatX.fits :pos_err randomcatO.fits 0.1 --out=random_circtest.fits --min-prob=0.01 | |
| nway-explain.py random_circtest.fits 95 | |
| nway.py --radius=10.0 randomcatX.fits :a:b randomcatO.fits 0.1 --out=random_asymtest.fits --min-prob=0.01 | |
| nway-explain.py random_asymtest.fits 95 | |
| nway.py --radius=10.0 randomcatX.fits :a:b:phi randomcatO.fits 0.1 --out=random_elltest.fits --min-prob=0.01 | |
| nway-explain.py random_elltest.fits 95 | |
| nway.py --radius=10.0 randomcatX.fits :a:b:phi randomcatR.fits :a:b:phi randomcatO.fits 0.1 --out=random3_elltest.fits --min-prob=0.01 | |
| nway-explain.py random3_elltest.fits 95 |