nominally working v1.2 percentile emission generation

generate_projection_output.m

@@ -45,11 +45,18 @@
    for en=1:c.ensemble_size
       emis_arr(en,1:length(so(en).burn_rate))=so(en).burn_rate;
    end
+   save('output/emissions_standalone.mat','emis_arr')
    plev=[5,10,25,50,75,90,95];
    percentiles=prctile(emis_arr,plev,1);%p is npercentiles by nyears
    %percentiles=median(emis_arr,1)
 
-   %TODO: scale percentiles by 2012 CMIP6 global annual average CO2 emissions value so they are entirely consistent with CMIP6 at this point.
+   percentiles(1,1)
+
+   %Scale all data by 2012 CMIP6 global annual average CO2 emissions value so they are entirely consistent with CMIP6 at this point.
+   CMIP6_emissions_2012=0.0092; %from scale-calculator.sh
+   CEPM_emissions_2012=percentiles(1,1); %from first year of CEPM output
+   scale_factor=CMIP6_emissions_2012/CEPM_emissions_2012
+   percentiles=percentiles.*scale_factor;
 
    for n=1:length(plev)
        p=percentiles(n,:);

scale-calculator.sh

@@ -1,14 +1,11 @@
 #!/bin/bash
 
-cdo yearmean -cat '../CO2-em-anthro*.nc' tmp1.nc
-cdo fldsum -mul tmp1.nc -gridarea tmp1.nc tmp2.nc
-ncap2 -O -s 'emissions = CO2_em_anthro.total($sector)' tmp2.nc tmp3.nc
-ncap2 -O -s 'emissions_scaled=emissions*31557600.' tmp3.nc tmp3.nc #seconds to years
-ncap2 -O -s 'emissions_scaled=emissions/44.*12.' tmp3.nc tmp3.nc #CO2 to C
-ncap2 -O -s 'emissions_scaled=emissions/1.e3' tmp3.nc tmp3.nc #kg to t
-ncap2 -O -s 'emissions_scaled=emissions/1.e12' tmp3.nc tmp3.nc #t to Tt
-
+fin=../CO2-em-anthro_input4MIPs_emissions_CMIP_CEDS-2017-05-18_gn_200001-201412.nc
 
-#seconds to years
-#CO2 to C
-#kg to teratons
+cdo -O yearmean $fin tmp1.nc
+cdo -O fldsum -mul tmp1.nc -gridarea tmp1.nc tmp2.nc
+ncap2 -O -s 'emissions = CO2_em_anthro.total($sector)' tmp2.nc tmp3.nc
+ncap2 -O -s 'emissions=emissions*31557600.' tmp3.nc tmp3.nc #seconds to years
+ncap2 -O -s 'emissions=emissions/44.*12.' tmp3.nc tmp3.nc #CO2 to C
+ncap2 -O -s 'emissions=emissions/1.e3' tmp3.nc tmp3.nc #kg to t
+ncap2 -O -s 'emissions=emissions/1.e12' tmp3.nc CMIP6_emissions.nc #t to Tt