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@JeongsooWon
JeongsooWon committed Mar 7, 2024
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Showing 35 changed files with 207,912 additions and 0 deletions.
14,906 changes: 14,906 additions & 0 deletions GENIE/data_NSCLC_all.txt

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1,069 changes: 1,069 additions & 0 deletions GENIE/data_NSCLC_asian.txt

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13,837 changes: 13,837 additions & 0 deletions GENIE/data_NSCLC_nonasian.txt

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87,580 changes: 87,580 additions & 0 deletions GENIE/data_mutations_c.txt

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6,944 changes: 6,944 additions & 0 deletions GENIE/data_mutations_c_asian.txt

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81,729 changes: 81,729 additions & 0 deletions GENIE/data_mutations_c_nonasian.txt

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6 changes: 6 additions & 0 deletions INPUT/P10_inp.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
P10 LRP1B c.4452G>T p.W1484C 0 0.2736
P10 PIK3R1 c.577T>G p.L193V 0.1269 0
P10 BRAF c.1141-1536T>A . 0 0.1724
P10 PRKDC c.6783G>A c.6783G>A(p.=) 0.4097 0.4395
P10 SMARCA4 c.3277C>T p.R1093* 0 0.3584
P10 PPP2R1A c.155T>G p.L52R 0 0.2617
11 changes: 11 additions & 0 deletions INPUT/P11_inp.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
P11 AKT3 c.*5422T>A . 0.1156 0.1241
P11 SF3B1 c.1876A>G p.N626D 0.0686 0.1262
P11 KDR c.2964_2966delAGA p.E990del 0 0.0901
P11 EPHA5 c.1472A>G p.E491G 0 0.0869
P11 ETV1 c.182-2557C>A . 0 0.1002
P11 SMO c.1590C>G p.I530M 0 0.0693
P11 BIRC3 c.-1733dupT 0 0.1365 0
P11 ERBB3 c.548-418T>C 0 0.0534 0
P11 FGF9 c.277+4228G>A . 0 0.1186
P11 TP53 c.376-1G>A . 0.1236 0.2108
P11 PPM1D c.1037G>T p.C346F 0.4616 0.2694
7 changes: 7 additions & 0 deletions INPUT/P12_inp.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
P12 ASXL2 c.2814_2819delCACTTT p.T939_L940del 0 0.2557
P12 CTNNB1 c.98C>A p.S33Y 0 0.2545
P12 FAT1 c.11494A>G p.M3832V 0 0.2417
P12 PIK3R1 c.1748_1750delGGT p.W583del 0 0.0989
P12 NTRK3 c.1586-37928C>T . 0 0.0566
P12 FANCI c.2254G>T p.V752F 0 0.0833
P12 MED12 c.2422G>A p.G808S 0 0.2893
133 changes: 133 additions & 0 deletions INPUT/P1_inp.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,133 @@
P1 WRAP73 c.986C>T p.Pro329Leu 0.056 0
P1 SRRM1 c.2705G>A p.Arg902His 0 0.057692307692307696
P1 SKINT1L n.1276-1856G>C . 0.0970873786407767 0
P1 USP24 c.4607C>T p.Thr1536Met 0.07894736842105263 0
P1 AKNAD1 c.1345G>A p.Glu449Lys 0.08 0
P1 CD53 c.516G>A p.Ala172Ala 0 0.09722222222222222
P1 HIPK1 c.1711C>A p.Leu571Ile 0.12195121951219512 0
P1 TCHH c.4801G>A p.Glu1601Lys 0 0.08364312267657993
P1 GON4L c.4545G>T p.Glu1515Asp 0 0.08823529411764706
P1 ARHGEF11 c.3542G>A p.Gly1181Glu 0 0.1069182389937107
P1 CEP350 c.4401C>T p.Val1467Val 0.056451612903225805 0
P1 BRINP3 c.346C>T p.Arg116Cys 0.06060606060606061 0
P1 IGFN1 c.4527_4631del p.Lys1510_Ser1544del 0.06741573033707865 0
P1 CDC42BPA c.2905C>T p.Arg969Cys 0.08 0
P1 DISC1 c.1124C>T p.Thr375Met 0.1724137931034483 0
P1 OR2T1 c.481G>A p.Glu161Lys 0.07407407407407407 0
P1 KIDINS220 c.2129G>A p.Arg710His 0.0625 0
P1 CCT7 c.1443C>T p.Asn481Asn 0.05454545454545454 0
P1 GPAT2 c.2060C>T p.Ser687Leu 0 0.13846153846153847
P1 ADRA2B c.918_923dupGGAGGA p.Glu307_Glu308dup 0 0.07203389830508475
P1 SCTR c.-998A>G . 0.0759493670886076 0
P1 TTN c.75364G>A p.Val25122Met 0.144 0
P1 ZNF718 c.211G>A p.Ala71Thr 0.08333333333333333 0
P1 USP17L10 c.1587C>A p.Cys529* 0.1111111111111111 0
P1 RELL1 c.66G>C p.Val22Val 0 0.07641196013289037
P1 PDHA2 c.856C>T p.Arg286Cys 0.07142857142857142 0
P1 SERINC5 c.529G>T p.Ala177Ser 0 0.07058823529411765
P1 ADGRV1 c.12325G>T p.Asp4109Tyr 0.08928571428571429 0
P1 PANK3 c.901A>T p.Ile301Phe 0.07894736842105263 0
P1 ADAMTS2 c.1660T>A p.Tyr554Asn 0.05142857142857143 0
P1 PHACTR1 c.1423G>A p.Asp475Asn 0.14285714285714285 0
P1 CD83 c.246C>T p.Phe82Phe 0.08333333333333333 0
P1 PGBD1 c.2295C>T p.Tyr765Tyr 0.0967741935483871 0
P1 HSPA1A c.1905C>T p.Pro635Pro 0.075 0
P1 VEGFA c.108C>T p.Pro36Pro 0.16666666666666666 0
P1 ADGRF4 c.65C>A p.Ser22Tyr 0.056818181818181816 0
P1 SIM1 c.1172C>A p.Ser391* 0.07377049180327869 0
P1 SUN3 c.103G>A p.Glu35Lys 0.05405405405405406 0
P1 COBL c.378C>T p.Thr126Thr 0.21621621621621623 0.16129032258064516
P1 CACNA2D1 c.143C>A p.Ala48Glu 0 0.06315789473684211
P1 CYP51A1 c.1508G>A p.Arg503His 0.061224489795918366 0
P1 KDM7A c.1437C>T p.Asn479Asn 0.06 0
P1 FDFT1 c.715G>A p.Gly239Arg 0.05660377358490566 0
P1 DOCK5 c.529G>A p.Glu177Lys 0.06 0
P1 FBXO16 c.541G>A p.Val181Ile 0.07407407407407407 0
P1 ASH2L c.1719G>A p.Thr573Thr 0.10909090909090909 0
P1 ADCK5 c.348C>G p.Ser116Arg 0 0.0546218487394958
P1 BNC2 c.1409G>A p.Arg470Gln 0 0.06741573033707865
P1 FBXO10 c.1740C>T p.Gly580Gly 0.1864406779661017 0
P1 ANKRD20A2 c.118G>A p.Ala40Thr 0.11510791366906475 0.0812807881773399
P1 FOXD4L3 c.704C>G p.Pro235Arg 0 0.07692307692307693
P1 TUT7 c.4130_4145delACCAAAGATACCCTGA p.Asn1377fs 0.056179775280898875 0
P1 SPATA31C1 c.1759G>A p.Gly587Ser 0 0.06840390879478828
P1 DNM1 c.796C>T p.Arg266Cys 0.05504587155963303 0
P1 ODF2 c.-760_-759insCC . 0 0.06756756756756757
P1 HMCN2 c.14102G>A p.Arg4701Gln 0 0.12654320987654322
P1 GTF3C5 c.1506A>G p.Glu502Glu 0.05737704918032787 0
P1 C8G c.88G>A p.Ala30Thr 0.05555555555555555 0
P1 CLIC3 c.453G>C p.Ala151Ala 0 0.056910569105691054
P1 DNAJB12 c.476C>T p.Ala159Val 0.06315789473684211 0
P1 AGAP11 c.214G>A p.Val72Ile 0 0.072
P1 OR51Q1 c.602G>T p.Gly201Val 0.057692307692307696 0
P1 MS4A8 c.601G>A p.Ala201Thr 0 0.07046979865771812
P1 SIPA1 c.2764A>T p.Ser922Cys 0 0.09022556390977443
P1 GAL3ST3 c.973C>T p.Arg325Cys 0.060240963855421686 0
P1 CHKA c.561C>T p.Leu187Leu 0.06779661016949153 0
P1 LRRC32 c.1954C>T p.Arg652Cys 0.15053763440860216 0
P1 GRM5 c.2368C>T p.Pro790Ser 0.058823529411764705 0
P1 ATN1 c.2729C>T p.Ala910Val 0.12962962962962962 0
P1 TAS2R46 c.37A>G p.Ile13Val 0 0.058823529411764705
P1 TAS2R46 c.24T>A p.Ile8Ile 0 0.06329113924050633
P1 OVOS2 n.2696C>A . 0.0546875 0
P1 LRRK2 c.1108G>A p.Ala370Thr 0 0.12
P1 MFSD5 c.439C>T p.Arg147Trp 0.0821917808219178 0
P1 UTP20 c.2949C>A p.Ser983Arg 0.13636363636363635 0
P1 ACACB c.6028C>T p.Leu2010Leu 0.14705882352941177 0.10126582278481013
P1 ZCCHC8 c.1324G>A p.Ala442Thr 0.05042016806722689 0
P1 NCOR2 c.7424C>T p.Ser2475Phe 0.17647058823529413 0.08163265306122448
P1 FRY c.6594G>A p.Thr2198Thr 0 0.07407407407407407
P1 LOC100129307 c.717C>G p.Val239Val 0 0.125
P1 LOC100129307 c.394C>T p.Leu132Phe 0.1 0
P1 GPHN c.2122C>T p.Arg708Trp 0.06818181818181818 0
P1 YLPM1 c.5975G>T p.Arg1992Leu 0.184 0
P1 RTL1 c.2270G>A p.Arg757His 0.09663865546218488 0.06198347107438017
P1 JAG2 c.3042C>T p.Cys1014Cys 0.050761421319796954 0
P1 LINC00226-LINC00221 n.106410781C>T . 0.08641975308641975 0
P1 CHR_START-CHEK2P2 n.19987922G>T . 0 0.0778816199376947
P1 DPP8 c.2128C>T p.Arg710* 0.0594059405940594 0
P1 C1QTNF8 c.649G>A p.Val217Ile 0.16886543535620052 0.08992805755395683
P1 PKD1 c.2102C>A p.Thr701Asn 0 0.06896551724137931
P1 GLIS2 c.*5987_*5996delACCGAGCTCC . 0.1038961038961039 0.06481481481481481
P1 ALG1 c.1292C>A p.Ala431Glu 0.15492957746478872 0.1865671641791045
P1 GDE1 c.652C>T p.Arg218Trp 0.05454545454545454 0
P1 VAT1L c.748G>A p.Val250Ile 0.05128205128205128 0
P1 ZNF594 c.1972G>A p.Gly658Arg 0.08620689655172414 0
P1 ALOX15B c.714C>T p.Phe238Phe 0.056074766355140186 0
P1 MYH10 c.2016C>T p.Ser672Ser 0.06315789473684211 0
P1 NF1 c.6806G>A p.Arg2269His 0.09836065573770492 0
P1 PCGF2 c.7C>T p.Arg3Trp 0.05217391304347826 0
P1 EZH1 c.1234C>T p.Arg412Cys 0.056074766355140186 0
P1 LSM12 c.570G>A p.Pro190Pro 0 0.05813953488372093
P1 PPM1D c.1261-2335G>C . 0 0.10666666666666667
P1 LAMA1 c.7850C>T p.Thr2617Met 0.05172413793103448 0
P1 MRO c.236G>A p.Arg79His 0.06382978723404255 0
P1 FGF22 c.404G>C p.Arg135Pro 0.06265664160401002 0
P1 SBNO2 c.3057C>T p.Tyr1019Tyr 0.05172413793103448 0
P1 SMARCA4 c.3554A>G p.Gln1185Arg 0 0.09832635983263599
P1 ZNF43 c.902C>G p.Ala301Gly 0 0.08955223880597014
P1 ZNF676 c.1266G>A p.Lys422Lys 0 0.06321839080459771
P1 ZNF728 c.1179C>G p.Asp393Glu 0 0.072
P1 TSHZ3 c.1826C>T p.Ala609Val 0 0.11808118081180811
P1 ZNF573 c.565_648delCCCTATGAATGTACAGAATGTGGGAAGAACTTTAGAAGTGGTTATCAGCTGACTGTGCATCAGAGATTTCATACTGGTGAGAAA p.Pro189_Lys216del 0.07792207792207792 0
P1 FBXO17-FBXO27 n.39014486G>A . 0.055900621118012424 0
P1 ERCC2 c.335G>A p.Arg112His 0 0.05825242718446602
P1 PTPRH c.2442G>A p.Arg814Arg 0.06511627906976744 0.09523809523809523
P1 ZNF418 c.*579G>A . 0.1016949152542373 0
P1 SHLD1 c.-96+6234T>C . 0.0945945945945946 0
P1 ROMO1 c.-4614C>T . 0.06493506493506493 0
P1 ARFGAP1 c.841C>T p.Arg281Cys 0.17094017094017094 0.09523809523809523
P1 ZGPAT c.881C>T p.Ser294Leu 0.05172413793103448 0
P1 TPTE c.1095C>A p.Ser365Arg 0.1702127659574468 0.2127659574468085
P1 BRWD1 c.1942C>T p.Arg648Cys 0.06756756756756757 0
P1 ELFN2 c.923C>T p.Ser308Leu 0 0.0718562874251497
P1 TRIOBP c.781C>T p.Pro261Ser 0 0.08893709327548807
P1 NHS c.3375G>A p.Ser1125Ser 0.21666666666666667 0
P1 DDX53 c.739C>T p.Pro247Ser 0.1625 0
P1 FTHL18 c.479C>G p.Ala160Gly 0 0.05263157894736842
P1 SLC9A7 c.485G>A p.Gly162Asp 0.07142857142857142 0
P1 MED12 c.2678C>T p.Ala893Val 0 0.07142857142857142
P1 MAGEE1 c.59C>A p.Ala20Glu 0.12529002320185614 0.06971677559912855
P1 BRWD3 c.2601T>G p.Asn867Lys 0 0.06382978723404255
P1 GPRASP1 c.646G>T p.Gly216Trp 0.08620689655172414 0
P1 VSIG1 c.187C>A p.His63Asn 0.08333333333333333 0
182 changes: 182 additions & 0 deletions INPUT/P2_inp_T1-T2.1.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,182 @@
P2[T1-T2_1] ACAP3 c.877A>G p.Ile293Val 0.05429864253393665 0.12133072407045009
P2[T1-T2_1] CELA2A c.603C>T p.Ile201Ile 0 0.1388888888888889
P2[T1-T2_1] PINK1 c.1021A>G p.Met341Val 0.05970149253731343 0.13142857142857142
P2[T1-T2_1] GRIK3 c.1587C>T p.Ile529Ile 0.056 0
P2[T1-T2_1] PABPC4 c.869G>A p.Arg290Gln 0.05217391304347826 0
P2[T1-T2_1] PODN c.1810G>A p.Glu604Lys 0.1377245508982036 0
P2[T1-T2_1] CYB5RL c.913G>A p.Ala305Thr 0.08 0
P2[T1-T2_1] AMY2A c.685C>T p.Leu229Leu 0.17391304347826086 0
P2[T1-T2_1] NTNG1 c.1128C>T p.Ile376Ile 0.06315789473684211 0
P2[T1-T2_1] GJA5 c.598C>T p.Arg200Trp 0.07246376811594203 0
P2[T1-T2_1] HRNR c.7261C>T p.Arg2421Cys 0.06607929515418502 0.05822498586772187
P2[T1-T2_1] THBS3 c.1125C>T p.Asn375Asn 0.051094890510948905 0
P2[T1-T2_1] ISG20L2 c.530G>A p.Arg177Gln 0.0594059405940594 0
P2[T1-T2_1] ETV3L c.559C>T p.Pro187Ser 0.08256880733944955 0.1415525114155251
P2[T1-T2_1] KIF14 c.1309G>A p.Glu437Lys 0.06666666666666667 0
P2[T1-T2_1] PTPN14 c.631C>T p.Arg211Cys 0.06172839506172839 0
P2[T1-T2_1] AGT c.1213C>G p.Leu405Val 0 0.05543710021321962
P2[T1-T2_1] DISC2 n.*1333G>T . 0.08333333333333333 0
P2[T1-T2_1] OR6F1 c.397G>A p.Gly133Arg 0 0.12680115273775217
P2[T1-T2_1] TPRKB c.115G>A p.Asp39Asn 0.05084745762711865 0
P2[T1-T2_1] INO80B-WBP1 n.464+3_464+76delGAGGATCTGGAGGTGGGGAAACTGGGTTTCTTATTATACCCGCCTAAAGAAAGAAGGTTGGTTCTGAAATGGGT . 0.13414634146341464 0
P2[T1-T2_1] MIR4436A-LOC107985911 n.89320082G>A . 0.2553191489361702 0
P2[T1-T2_1] TTN c.103906C>T p.Arg34636Cys 0.08 0
P2[T1-T2_1] PARD3B c.1944C>T p.Asp648Asp 0.05084745762711865 0
P2[T1-T2_1] FZD5 c.1029C>T p.Ala343Ala 0 0.08571428571428572
P2[T1-T2_1] ERBB4 c.479C>T p.Thr160Ile 0.07692307692307693 0
P2[T1-T2_1] FN1 c.4593G>A p.Leu1531Leu 0.056818181818181816 0
P2[T1-T2_1] SNED1 c.225C>T p.Asn75Asn 0.08450704225352113 0
P2[T1-T2_1] FARP2 c.644C>T p.Ser215Leu 0.050505050505050504 0
P2[T1-T2_1] FANCD2 c.865G>A p.Val289Ile 0.06896551724137931 0
P2[T1-T2_1] C3orf20 c.588C>T p.Ala196Ala 0 0.07236842105263158
P2[T1-T2_1] NR2C2 c.1701G>A p.Pro567Pro 0.05660377358490566 0
P2[T1-T2_1] CCDC13 c.1003C>T p.Arg335Trp 0.05172413793103448 0
P2[T1-T2_1] ANO10 c.1123C>T p.Arg375Cys 0.05825242718446602 0
P2[T1-T2_1] CCDC66 c.1382G>A p.Arg461Gln 0.06382978723404255 0
P2[T1-T2_1] SHQ1 c.1003C>T p.Arg335Cys 0.05128205128205128 0
P2[T1-T2_1] PDZRN3 c.1974C>T p.Ser658Ser 0 0.15748031496062992
P2[T1-T2_1] FRG2C c.120C>T p.Phe40Phe 0.20689655172413793 0
P2[T1-T2_1] SLC49A4 c.979G>T p.Gly327* 0 0.0967741935483871
P2[T1-T2_1] ACAD11 c.1327G>A p.Gly443Arg 0.08450704225352113 0
P2[T1-T2_1] C3orf33 c.115-1484C>G . 0.2413793103448276 0
P2[T1-T2_1] PARL c.914C>T p.Thr305Met 0.0594059405940594 0
P2[T1-T2_1] ALG3 c.313G>A p.Val105Met 0.08695652173913043 0
P2[T1-T2_1] DLG1 c.1532G>A p.Arg511His 0.07894736842105263 0
P2[T1-T2_1] KLHL5 c.343C>T p.Arg115* 0.05504587155963303 0
P2[T1-T2_1] STAP1 c.89G>A p.Gly30Asp 0.09230769230769231 0
P2[T1-T2_1] SEC31A c.1788C>T p.Ala596Ala 0.06521739130434782 0
P2[T1-T2_1] WDFY3 c.5899C>T p.Arg1967Trp 0.06976744186046512 0
P2[T1-T2_1] CXXC4 c.32C>T p.Pro11Leu 0 0.11888111888111888
P2[T1-T2_1] ANKRD50 c.2492G>A p.Arg831His 0.05454545454545454 0
P2[T1-T2_1] SLC6A19 c.499G>A p.Ala167Thr 0 0.10961538461538461
P2[T1-T2_1] FBXO4 c.426-1155C>G . 0.14102564102564102 0
P2[T1-T2_1] HTR1A c.22C>A p.Gln8Lys 0 0.0736196319018405
P2[T1-T2_1] MAST4 c.4734G>A p.Pro1578Pro 0.05454545454545454 0
P2[T1-T2_1] ADGRV1 c.5233C>T p.Arg1745Cys 0.05405405405405406 0
P2[T1-T2_1] KIAA0825 c.1787C>T p.Thr596Met 0.056074766355140186 0
P2[T1-T2_1] GEMIN5 c.95C>T p.Ala32Val 0 0.12121212121212122
P2[T1-T2_1] FAM193B c.1077G>A p.Arg359Arg 0 0.13725490196078433
P2[T1-T2_1] H2BC12 c.194C>T p.Ser65Phe 0 0.07648183556405354
P2[T1-T2_1] GTF2H4 c.835C>T p.Arg279Trp 0.058823529411764705 0
P2[T1-T2_1] SGK1 c.1425C>T p.Asn475Asn 0.061855670103092786 0
P2[T1-T2_1] PDE10A c.1315C>T p.Arg439Trp 0.05825242718446602 0
P2[T1-T2_1] HDAC9 c.2734G>A p.Val912Ile 0.05263157894736842 0
P2[T1-T2_1] MACC1 c.524G>A p.Arg175Gln 0.053763440860215055 0
P2[T1-T2_1] ZNF92 c.621T>C p.Gly207Gly 0 0.050505050505050504
P2[T1-T2_1] BAZ1B c.1024T>C p.Leu342Leu 0.05714285714285714 0
P2[T1-T2_1] RCC1L c.1199G>A p.Arg400Gln 0.06741573033707865 0
P2[T1-T2_1] CCDC146 c.2209G>A p.Glu737Lys 0.16666666666666666 0
P2[T1-T2_1] SAMD9 c.2944C>T p.Arg982Cys 0.06 0
P2[T1-T2_1] STRIP2 c.1683C>T p.Ile561Ile 0.08045977011494253 0
P2[T1-T2_1] TCAF2 c.*988-39582C>A . 0.057692307692307696 0
P2[T1-T2_1] AGAP3 c.420G>A p.Lys140Lys 0.05084745762711865 0
P2[T1-T2_1] ARHGEF10 c.3234G>A p.Thr1078Thr 0.06315789473684211 0
P2[T1-T2_1] TNKS c.3052G>A p.Glu1018Lys 0 0.05982905982905983
P2[T1-T2_1] CDCA2 c.2518C>T p.Arg840* 0.20689655172413793 0
P2[T1-T2_1] CHRNB3 c.271C>T p.Arg91Cys 0.05263157894736842 0
P2[T1-T2_1] PCMTD1 c.54C>T p.Arg18Arg 0 0.14121037463976946
P2[T1-T2_1] APTX c.952C>T p.Arg318Cys 0.056451612903225805 0
P2[T1-T2_1] DNAJA1 c.557G>A p.Arg186Gln 0.13636363636363635 0
P2[T1-T2_1] DNAJA1 c.935G>A p.Arg312His 0.05309734513274336 0
P2[T1-T2_1] CNTNAP3 c.3769A>G p.Ile1257Val 0.10526315789473684 0
P2[T1-T2_1] KLF9 c.133A>T p.Lys45* 0 0.1409921671018277
P2[T1-T2_1] GAS1 c.400G>A p.Glu134Lys 0.07792207792207792 0
P2[T1-T2_1] ZNF483 c.1059C>T p.Thr353Thr 0.11904761904761904 0
P2[T1-T2_1] PPP1R26 c.3163G>A p.Val1055Ile 0.058823529411764705 0
P2[T1-T2_1] LCN15 c.16C>T p.Leu6Phe 0 0.07352941176470588
P2[T1-T2_1] IL15RA c.642C>T p.Ser214Ser 0 0.12315270935960591
P2[T1-T2_1] ZNF33A c.1100G>A p.Arg367Gln 0.05263157894736842 0
P2[T1-T2_1] HELLS-CYP2C18 n.94608002A>G . 0.09644670050761421 0
P2[T1-T2_1] HTRA1 c.1156C>T p.Arg386* 0.08421052631578947 0
P2[T1-T2_1] GPR26-CPXM2 n.123713455T>C . 0.14705882352941177 0
P2[T1-T2_1] ANO9 c.992C>T p.Thr331Ile 0 0.11518324607329843
P2[T1-T2_1] OR9I1 c.585C>T p.Ile195Ile 0 0.07692307692307693
P2[T1-T2_1] GNG3 c.17C>T p.Pro6Leu 0.08620689655172414 0
P2[T1-T2_1] BBS1 c.468G>A p.Leu156Leu 0 0.12951807228915663
P2[T1-T2_1] C11orf80 c.103_104insCGGGCGG p.Gly35fs 0.08771929824561403 0.13076923076923078
P2[T1-T2_1] LRTOMT c.*175C>T . 0.051470588235294115 0
P2[T1-T2_1] USP35 c.248G>A p.Arg83His 0 0.1695447409733124
P2[T1-T2_1] FUT4 c.604G>A p.Asp202Asn 0 0.05128205128205128
P2[T1-T2_1] ARHGAP42 c.*3862G>A . 0.08108108108108109 0
P2[T1-T2_1] BIRC3 c.954-1227delG . 0.056451612903225805 0
P2[T1-T2_1] DSCAML1 c.1829G>T p.Gly610Val 0 0.13989637305699482
P2[T1-T2_1] RPUSD4 c.299_301delTCC p.Leu100del 0.06622516556291391 0
P2[T1-T2_1] PRB1 c.860C>A p.Pro287His 0 0.13032581453634084
P2[T1-T2_1] MUC19 c.13947C>T p.Asp4649Asp 0.07291666666666667 0
P2[T1-T2_1] NELL2 c.1796G>C p.Gly599Ala 0.10526315789473684 0
P2[T1-T2_1] ACACB c.2913G>A p.Pro971Pro 0.057692307692307696 0
P2[T1-T2_1] PLBD2 c.1611C>T p.Ser537Ser 0.05084745762711865 0
P2[T1-T2_1] KDM2B c.2217C>T p.Tyr739Tyr 0.05434782608695652 0
P2[T1-T2_1] RCBTB2 c.1435C>T p.Arg479Cys 0.06382978723404255 0
P2[T1-T2_1] CDADC1 c.1A>G p.Met1? 0 0.07518796992481203
P2[T1-T2_1] SLITRK5 c.284G>A p.Arg95His 0.07407407407407407 0
P2[T1-T2_1] HECTD1 c.4817C>T p.Ser1606Leu 0.07246376811594203 0
P2[T1-T2_1] INSM2 c.305C>T p.Pro102Leu 0.09090909090909091 0
P2[T1-T2_1] GPHN c.64+42501T>C . 0.08387096774193549 0
P2[T1-T2_1] CEP128 c.1116G>T p.Leu372Leu 0.08791208791208792 0
P2[T1-T2_1] LOC105370697-MIR8071-1 n.105600090C>T . 0.15897435897435896 0.1564102564102564
P2[T1-T2_1] LINC00221-MIR5195 n.106557029A>G . 0.09411764705882353 0
P2[T1-T2_1] RYR3 c.6226G>A p.Val2076Met 0.08536585365853659 0
P2[T1-T2_1] TTBK2 c.316C>T p.Arg106Cys 0.05154639175257732 0
P2[T1-T2_1] HCN4 c.1239C>T p.Ser413Ser 0 0.155893536121673
P2[T1-T2_1] STRA6 c.840G>A p.Gly280Gly 0 0.11328125
P2[T1-T2_1] PSTPIP1 c.591G>A p.Ser197Ser 0.05217391304347826 0
P2[T1-T2_1] SYNM c.2816G>A p.Gly939Asp 0.05217391304347826 0
P2[T1-T2_1] SEC14L5 c.606C>T p.Ser202Ser 0.10305343511450382 0.11597374179431072
P2[T1-T2_1] MVP c.1404G>A p.Val468Val 0 0.08997955010224949
P2[T1-T2_1] PPP4C c.307C>T p.Arg103Cys 0.1125 0
P2[T1-T2_1] SRCAP c.6141G>A p.Thr2047Thr 0.06818181818181818 0
P2[T1-T2_1] CTCF c.847C>T p.Arg283Cys 0.06504065040650407 0
P2[T1-T2_1] ZFHX3 c.6694G>T p.Glu2232* 0.09411764705882353 0.14606741573033707
P2[T1-T2_1] NPIPB15 c.132C>G p.His44Gln 0.07042253521126761 0
P2[T1-T2_1] CLEC18B c.586A>G p.Ile196Val 0.07758620689655173 0.06956521739130435
P2[T1-T2_1] ADAMTS18 c.3067G>A p.Ala1023Thr 0 0.14227642276422764
P2[T1-T2_1] ZC3H18 c.2381G>A p.Arg794Gln 0.06666666666666667 0
P2[T1-T2_1] NCBP3 c.460G>A p.Glu154Lys 0.07692307692307693 0
P2[T1-T2_1] ENO3 c.1285C>T p.Arg429Cys 0.05357142857142857 0
P2[T1-T2_1] DLG4 c.-2045G>T . 0 0.150997150997151
P2[T1-T2_1] KCNAB3 c.385G>A p.Glu129Lys 0.10294117647058823 0
P2[T1-T2_1] AKAP10 c.1372C>T p.Arg458* 0.07142857142857142 0
P2[T1-T2_1] MYO18A c.676C>T p.Arg226Trp 0.05063291139240506 0
P2[T1-T2_1] SLFN11 c.2044G>A p.Gly682Arg 0.08163265306122448 0
P2[T1-T2_1] KRTAP3-3 c.21A>C p.Arg7Arg 0.07661290322580645 0.07834101382488479
P2[T1-T2_1] ABI3 c.660C>T p.Val220Val 0.07352941176470588 0
P2[T1-T2_1] VEZF1 c.41A>T p.Glu14Val 0.050359712230215826 0
P2[T1-T2_1] VEZF1 c.39T>A p.His13Gln 0.050359712230215826 0
P2[T1-T2_1] VMP1 c.474C>T p.Pro158Pro 0.05825242718446602 0
P2[T1-T2_1] ERN1 c.131C>T p.Ala44Val 0.06382978723404255 0
P2[T1-T2_1] ST6GALNAC1 c.1233C>T p.Tyr411Tyr 0.05263157894736842 0
P2[T1-T2_1] NEDD4L c.1691C>T p.Thr564Met 0.05084745762711865 0
P2[T1-T2_1] SAFB2 c.469G>A p.Asp157Asn 0.09375 0
P2[T1-T2_1] MLLT1 c.888C>T p.Ser296Ser 0.05263157894736842 0
P2[T1-T2_1] ADGRE1 c.1286G>A p.Arg429Gln 0.10638297872340426 0
P2[T1-T2_1] MUC16 c.39801T>A p.Thr13267Thr 0.0784313725490196 0
P2[T1-T2_1] ADGRL1 c.1238C>T p.Thr413Met 0.05309734513274336 0
P2[T1-T2_1] ZNF56 c.-605+21450G>C . 0.10416666666666667 0
P2[T1-T2_1] ZNF430 c.1058_1225del p.Ala353_Lys408del 0 0.1210762331838565
P2[T1-T2_1] ZNF676 c.1347C>T p.Tyr449Tyr 0.0761904761904762 0
P2[T1-T2_1] ZNF569 c.1015G>C p.Ala339Pro 0.060810810810810814 0
P2[T1-T2_1] PLA2G4C c.98G>A p.Arg33Gln 0.05333333333333334 0
P2[T1-T2_1] IZUMO2 c.308-1191A>G . 0.05813953488372093 0
P2[T1-T2_1] ZNF616 c.1436G>A p.Arg479Gln 0.08695652173913043 0
P2[T1-T2_1] ZNF578 c.1504C>T p.Arg502Cys 0.0641025641025641 0
P2[T1-T2_1] TARM1 c.-39_50delGCGAGACTCTGTCTCTGGAATGAATGAAAGAAAGAATGAATGAAAGAAAGAAAAAAGAAAGAAAGAAAGGAAAGAAAAAGAAAGAAAGA p.Met1fs 0.14102564102564102 0
P2[T1-T2_1] LILRA6 c.1124A>T p.His375Leu 0.14798206278026907 0.07284079084287201
P2[T1-T2_1] ZSCAN5C c.975G>A p.Pro325Pro 0.08333333333333333 0
P2[T1-T2_1] SPEF1 c.248C>T p.Ser83Leu 0 0.06601941747572816
P2[T1-T2_1] EPB41L1 c.1016G>A p.Arg339Gln 0.05454545454545454 0
P2[T1-T2_1] SALL4 c.2714G>A p.Arg905Gln 0.05454545454545454 0
P2[T1-T2_1] C20orf85 c.240_252+72delGAAGTACATCAAGGTTTGAAACGTTTTTAAATACTCATTTTTTTAAAATACTCATTTTCCTAAGTAAGAAATAAGCCCCAGTGGA p.Lys81fs 0.2682926829268293 0
P2[T1-T2_1] TPTE c.152G>A p.Arg51Gln 0.08602150537634409 0.10884353741496598
P2[T1-T2_1] TPTE-ANKRD30BP2 n.10649529C>T . 0.11904761904761904 0.17330861909175163
P2[T1-T2_1] SON c.3242G>A p.Arg1081Gln 0.05714285714285714 0
P2[T1-T2_1] KRTAP10-12 c.56C>A p.Ser19Tyr 0 0.11969839773798303
P2[T1-T2_1] POTEH c.1367T>A p.Met456Lys 0.15254237288135594 0.1527777777777778
P2[T1-T2_1] MYH9 c.887C>T p.Pro296Leu 0.05714285714285714 0
P2[T1-T2_1] APOBEC3B c.266C>T p.Thr89Ile 0.08040201005025126 0.08644067796610169
P2[T1-T2_1] GAGE12D c.228C>G p.Ser76Arg 0.08695652173913043 0
P2[T1-T2_1] HNRNPH2 c.477T>C p.Phe159Phe 0.07920792079207921 0.0625
P2[T1-T2_1] FRMPD3 c.1745A>G p.Asn582Ser 0 0.13089005235602094
P2[T1-T2_1] KIAA1210 c.1127C>T p.Thr376Ile 0 0.13953488372093023
P2[T1-T2_1] SLC25A14 c.666T>C p.Gly222Gly 0.08064516129032258 0
P2[T1-T2_1] G6PD c.210G>A p.Ser70Ser 0.05217391304347826 0
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