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Download plots button for carbon tracking tab
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Button to download plots as zip file added. Files currently saved and overwritten rather than being temporary files; something to change
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@ciara-donegan
ciara-donegan committed Feb 14, 2024
1 parent 1d7814c commit 836c2f0
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Showing 4 changed files with 184 additions and 150 deletions.
331 changes: 182 additions & 149 deletions h2/components/modules/mod_tracking.R
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Original file line number Diff line number Diff line change
Expand Up @@ -52,7 +52,7 @@ tracking_ui <- function(id) {
# ns = NS("tracking_1")
# ),
actionButton(ns("generate"),"Generate"),
downloadButton(ns("downloadGif"),"Download Plot"),
downloadButton(ns("download"),"Download Plots"),
),
mainPanel(
# conditionalPanel(
Expand Down Expand Up @@ -137,156 +137,180 @@ tracking_server <- function(id) {

# Carbon amount
if (input$view == 1) {

print("Generating plot...")
area_plot <-
plot_ly(
filter(df, source_name == "HL Ocean"),
x = ~ year,
y = ~ source_amt,
name = "HL Ocean",
type = "scatter",
mode = "none",
stackgroup = "one",
fillcolor = "#2C728EFF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "LL Ocean"),
y = ~ source_amt,
name = "LL Ocean",
fillcolor = "#3B528BFF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Intermediate Ocean"),
y = ~ source_amt,
name = "Intermediate Ocean",
fillcolor = "#472D7BFF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Deep Ocean"),
y = ~ source_amt,
name = "Deep Ocean",
fillcolor = "#440154FF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Atmosphere"),
y = ~ source_amt,
name = "Atmosphere",
fillcolor = "#21908CFF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Vegetation"),
y = ~ source_amt,
name = "Vegetation",
fillcolor = "#27AD81FF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Soil"),
y = ~ source_amt,
name = "Soil",
fillcolor = "#5DC863FF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Detritus"),
y = ~ source_amt,
name = "Detritus",
fillcolor = "#AADC32FF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Fossil Fuels"),
y = ~ source_amt,
name = "Fossil Fuels",
fillcolor = "#FDE725FF"
)
area_plot <-
area_plot %>% layout(title = paste0("Amount of Carbon in ", selectedPool(), " by Source"),
xaxis = list(title=""),
yaxis = list(title="Carbon Pool (Pg C)"))
ggplot(df, aes(x=year,y=source_amt,fill=source_name)) +
geom_area(stat="identity") +
scale_fill_viridis_d() +
scale_color_viridis_d() +
ggtitle(paste0("Amount of Carbon in ", selectedPool(), " by Source")) +
xlab("") +
ylab("Carbon Pool (Pg C)")

# save as file
ggsave("outfile_area.png",plot=area_plot,device="png")

# print("Generating plot...")
# area_plot <-
# plot_ly(
# filter(df, source_name == "HL Ocean"),
# x = ~ year,
# y = ~ source_amt,
# name = "HL Ocean",
# type = "scatter",
# mode = "none",
# stackgroup = "one",
# fillcolor = "#2C728EFF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "LL Ocean"),
# y = ~ source_amt,
# name = "LL Ocean",
# fillcolor = "#3B528BFF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Intermediate Ocean"),
# y = ~ source_amt,
# name = "Intermediate Ocean",
# fillcolor = "#472D7BFF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Deep Ocean"),
# y = ~ source_amt,
# name = "Deep Ocean",
# fillcolor = "#440154FF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Atmosphere"),
# y = ~ source_amt,
# name = "Atmosphere",
# fillcolor = "#21908CFF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Vegetation"),
# y = ~ source_amt,
# name = "Vegetation",
# fillcolor = "#27AD81FF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Soil"),
# y = ~ source_amt,
# name = "Soil",
# fillcolor = "#5DC863FF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Detritus"),
# y = ~ source_amt,
# name = "Detritus",
# fillcolor = "#AADC32FF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Fossil Fuels"),
# y = ~ source_amt,
# name = "Fossil Fuels",
# fillcolor = "#FDE725FF"
# )
# area_plot <-
# area_plot %>% layout(title = paste0("Amount of Carbon in ", selectedPool(), " by Source"),
# xaxis = list(title=""),
# yaxis = list(title="Carbon Pool (Pg C)"))
}

# Carbon fraction
if (input$view == 2) {

print("Generating plot...")
area_plot <-
plot_ly(
filter(df, source_name == "HL Ocean"),
x = ~ year,
y = ~ source_fraction,
name = "HL Ocean",
type = "scatter",
mode = "none",
stackgroup = "one",
fillcolor = "#2C728EFF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "LL Ocean"),
y = ~ source_fraction,
name = "LL Ocean",
fillcolor = "#3B528BFF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Intermediate Ocean"),
y = ~ source_fraction,
name = "Intermediate Ocean",
fillcolor = "#472D7BFF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Deep Ocean"),
y = ~ source_fraction,
name = "Deep Ocean",
fillcolor = "#440154FF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Atmosphere"),
y = ~ source_fraction,
name = "Atmosphere",
fillcolor = "#21908CFF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Vegetation"),
y = ~ source_fraction,
name = "Vegetation",
fillcolor = "#27AD81FF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Soil"),
y = ~ source_fraction,
name = "Soil",
fillcolor = "#5DC863FF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Detritus"),
y = ~ source_fraction,
name = "Detritus",
fillcolor = "#AADC32FF"
)
area_plot <-
area_plot %>% add_trace(
data = filter(df, source_name == "Fossil Fuels"),
y = ~ source_fraction,
name = "Fossil Fuels",
fillcolor = "#FDE725FF"
)
area_plot <-
area_plot %>% layout(title = paste0("Fraction of Carbon in ", selectedPool(), " by Source"),
xaxis = list(title=""),
yaxis = list(title="Carbon Pool (Fraction)"))
ggplot(df, aes(x=year,y=source_fraction,fill=source_name)) +
geom_area(stat="identity") +
scale_fill_viridis_d() +
scale_color_viridis_d() +
ggtitle(paste0("Fraction of Carbon in ", selectedPool(), " by Source")) +
xlab("") +
ylab("Carbon Pool (Fraction)")

# save as file
ggsave("outfile_area.svg",plot=area_plot,device="svg",
width=500,height=500,units="px")

#
# plot_ly(
# filter(df, source_name == "HL Ocean"),
# x = ~ year,
# y = ~ source_fraction,
# name = "HL Ocean",
# type = "scatter",
# mode = "none",
# stackgroup = "one",
# fillcolor = "#2C728EFF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "LL Ocean"),
# y = ~ source_fraction,
# name = "LL Ocean",
# fillcolor = "#3B528BFF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Intermediate Ocean"),
# y = ~ source_fraction,
# name = "Intermediate Ocean",
# fillcolor = "#472D7BFF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Deep Ocean"),
# y = ~ source_fraction,
# name = "Deep Ocean",
# fillcolor = "#440154FF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Atmosphere"),
# y = ~ source_fraction,
# name = "Atmosphere",
# fillcolor = "#21908CFF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Vegetation"),
# y = ~ source_fraction,
# name = "Vegetation",
# fillcolor = "#27AD81FF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Soil"),
# y = ~ source_fraction,
# name = "Soil",
# fillcolor = "#5DC863FF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Detritus"),
# y = ~ source_fraction,
# name = "Detritus",
# fillcolor = "#AADC32FF"
# )
# area_plot <-
# area_plot %>% add_trace(
# data = filter(df, source_name == "Fossil Fuels"),
# y = ~ source_fraction,
# name = "Fossil Fuels",
# fillcolor = "#FDE725FF"
# )
# area_plot <-
# area_plot %>% layout(title = paste0("Fraction of Carbon in ", selectedPool(), " by Source"),
# xaxis = list(title=""),
# yaxis = list(title="Carbon Pool (Fraction)"))
}

output$fig <- renderPlotly(area_plot)
Expand All @@ -295,7 +319,7 @@ tracking_server <- function(id) {

output$gif <- renderImage({
# Temp file to save output
outfile <- tempfile(fileext='.gif')
#outfile <- tempfile(fileext='.gif')

# Make animation
p <- ggplot(df,aes(fill=source_name,color=source_name,
Expand All @@ -311,8 +335,8 @@ tracking_server <- function(id) {
theme(plot.title = element_text(size=20,face="bold"),
plot.subtitle = element_text(size=18),
legend.position="none",
panel.grid.major.x = element_line(size=.1,color="snow2"),
panel.grid.minor.x = element_line(size=.1,color="snow2"),
panel.grid.major.x = element_line(linewidth=.1,color="snow2"),
panel.grid.minor.x = element_line(linewidth=.1,color="snow2"),
plot.margin = margin(1,6,1,6,"cm")) +
ylab("Carbon (Pg)") +
xlab("") +
Expand All @@ -330,17 +354,26 @@ tracking_server <- function(id) {
labs(title=paste0(selectedPool()," Carbon Sources"),
subtitle="Year: {closest_state}")

anim_save("outfile.gif", animate(anim, height = 500, width = 800,
anim_save("outfile_bar.gif", animate(anim, height = 500, width = 800,
end_pause=30))
list(src = 'outfile.gif',
list(src = 'outfile_bar.gif',
contentType = 'image/gif'
# width = 800,
# height = 300,
# alt = "An animation tracking the sources of carbon in a chosen pool"
)}, deleteFile = TRUE)
)}, deleteFile = FALSE)
# }

}) %>%
bindEvent(input$generate)

# Download plots
output$download <- downloadHandler(
filename="myplots.zip",
content=function(file){
zip(file,files=c('outfile_area.png','outfile_bar.gif'))
}
)

})
}
3 changes: 2 additions & 1 deletion h2/global.r
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Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,9 @@ library(shinyWidgets)
library(gganimate)
library(tidyverse)
library(shinyBS)
library(zip)

#setwd("~/GitHub/hectorui/h2")
setwd("~/GitHub/hectorui/h2")

source("./components/modules/mod_graph.r")
source("./components/modules/mod_run.r")
Expand Down
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Binary file added h2/outfile_bar.gif
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