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Added more consistent types to iteration indices. #429

Added more consistent types to iteration indices.

Added more consistent types to iteration indices. #429

Workflow file for this run

name: build
# Controls when the action will run
on:
# Trigger the workflow on all pushes, except on tag creation
push:
branches:
- '**'
tags-ignore:
- '**'
# Trigger the workflow on all pull requests
pull_request: ~
# Allow workflow to be dispatched on demand
workflow_dispatch: ~
env:
ATLAS_TOOLS: ${{ github.workspace }}/tools
CTEST_PARALLEL_LEVEL: 1
CACHE_SUFFIX: v1
jobs:
ci:
name: ci
strategy:
fail-fast: false # false: try to complete all jobs
matrix:
build_type: [Release,Debug]
name:
- linux gnu-10
- linux gnu-12
- linux gnu-7
- linux clang-12
# - linux nvhpc-22.11
- linux intel
- linux intel-classic
- macos
include:
- name: linux gnu-10
os: ubuntu-20.04
compiler: gnu-10
compiler_cc: gcc-10
compiler_cxx: g++-10
compiler_fc: gfortran-10
caching: true
coverage: true
- name: linux gnu-12
os: ubuntu-22.04
compiler: gnu-12
compiler_cc: gcc-12
compiler_cxx: g++-12
compiler_fc: gfortran-12
cmake_options: -DENABLE_OMP_CXX=OFF
caching: true
coverage: false
- name: linux gnu-7
os: ubuntu-20.04
compiler: gnu-7
compiler_cc: gcc-7
compiler_cxx: g++-7
compiler_fc: gfortran-7
caching: true
coverage: false
- name: linux clang-12
os: ubuntu-20.04
compiler: clang-12
compiler_cc: clang-12
compiler_cxx: clang++-12
compiler_fc: gfortran-10
caching: true
coverage: false
- name: linux clang-12
build_type: Release
os: ubuntu-20.04
compiler: clang-12
compiler_cc: clang-12
compiler_cxx: clang++-12
compiler_fc: gfortran-10
ctest_options: "-LE mpi" # For now until Checkerboard fixed
caching: true
coverage: false
# - name: linux nvhpc-22.11
# os: ubuntu-20.04
# compiler: nvhpc-22.11
# compiler_cc: nvc
# compiler_cxx: nvc++
# compiler_fc: nvfortran
# cmake_options: -DCMAKE_CXX_FLAGS=--diag_suppress177
# ctest_options: "-LE mpi" # For now until Checkerboard fixed
# caching: false
# coverage: false
- name : linux intel
os: ubuntu-20.04
compiler: intel
compiler_cc: icx
compiler_cxx: icpx
compiler_fc: ifx
caching: true
coverage: false
- name : linux intel-classic
os: ubuntu-20.04
compiler: intel-classic
compiler_cc: icc
compiler_cxx: icpc
compiler_fc: ifort
caching: true
coverage: false
- name: macos
# Xcode compiler requires empty environment variables, so we pass null (~) here
os: macos-12
compiler: clang-14
compiler_cc: ~
compiler_cxx: ~
compiler_fc: gfortran-11
caching: true
coverage: false
cmake_options: -DMPI_SLOTS=4
runs-on: ${{ matrix.os }}
steps:
- name: Checkout Repository
uses: actions/checkout@v2
- name: Set up Homebrew
id: set-up-homebrew
uses: Homebrew/actions/setup-homebrew@master
- name: Environment
run: |
echo "DEPS_DIR=${{ runner.temp }}/deps" >> $GITHUB_ENV
echo "CC=${{ matrix.compiler_cc }}" >> $GITHUB_ENV
echo "CXX=${{ matrix.compiler_cxx }}" >> $GITHUB_ENV
echo "FC=${{ matrix.compiler_fc }}" >> $GITHUB_ENV
if [[ "${{ matrix.os }}" =~ macos ]]; then
export HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=1
export HOMEBREW_NO_AUTO_UPDATE=1
export HOMEBREW_NO_INSTALL_CLEANUP=1
echo "HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=1" >> $GITHUB_ENV
echo "HOMEBREW_NO_AUTO_UPDATE=1" >> $GITHUB_ENV
echo "HOMEBREW_NO_INSTALL_CLEANUP=1" >> $GITHUB_ENV
brew install ninja
brew install libomp
else
sudo apt-get update
if [[ "${{ matrix.compiler }}" =~ gnu-7 ]]; then
sudo apt-get install gcc-7 g++-7 gfortran-7
fi
sudo apt-get install ninja-build
fi
printenv
- name: Cache Dependencies
# There seems to be a problem with cached NVHPC dependencies, leading to SIGILL perhaps due to slightly different architectures
if: matrix.caching
id: deps-cache
uses: pat-s/[email protected]
with:
path: ${{ env.DEPS_DIR }}
key: deps-${{ matrix.os }}-${{ matrix.compiler }}-v1
- name: Install NVHPC compiler
if: contains( matrix.compiler, 'nvhpc' )
shell: bash -eux {0}
run: |
${ATLAS_TOOLS}/install-nvhpc.sh --prefix ${DEPS_DIR}/nvhpc --version 22.11
source ${DEPS_DIR}/nvhpc/env.sh
echo "${NVHPC_DIR}/compilers/bin" >> $GITHUB_PATH
[ -z ${MPI_HOME+x} ] || echo "MPI_HOME=${MPI_HOME}" >> $GITHUB_ENV
- name: Install Intel oneAPI compiler
if: contains( matrix.compiler, 'intel' )
run: |
${ATLAS_TOOLS}/install-intel-oneapi.sh
source /opt/intel/oneapi/setvars.sh
printenv >> $GITHUB_ENV
echo "CACHE_SUFFIX=$CC-$($CC -dumpversion)" >> $GITHUB_ENV
- name: Install MPI
shell: bash -eux {0}
run: |
FCFLAGS=-fPIC CFLAGS=-fPIC FFLAGS=-fPIC ${ATLAS_TOOLS}/install-mpi.sh --mpi openmpi --prefix ${DEPS_DIR}/openmpi
[ -f ${DEPS_DIR}/openmpi/env.sh ] && source ${DEPS_DIR}/openmpi/env.sh
[ -z ${MPI_HOME+x} ] || echo "MPI_HOME=${MPI_HOME}" >> $GITHUB_ENV
- name: Install FFTW
shell: bash -eux {0}
run: |
${ATLAS_TOOLS}/install-fftw.sh --version 3.3.10 --prefix ${DEPS_DIR}/fftw
echo "FFTW_ROOT=${DEPS_DIR}/fftw" >> $GITHUB_ENV
- name: Install Qhull
shell: bash -eux {0}
run: |
${ATLAS_TOOLS}/install-qhull.sh --version 8.1-alpha3 --prefix ${DEPS_DIR}/qhull
echo "Qhull_ROOT=${DEPS_DIR}/qhull" >> $GITHUB_ENV
- name: Install LZ4
if: "!contains( matrix.compiler, 'nvhpc' )"
run: |
brew install lz4
echo "LZ4_ROOT=$(brew --prefix lz4)" >> $GITHUB_ENV
- name: Install Eigen
if: "!contains( matrix.compiler, 'nvhpc' )"
run: |
brew install eigen
- name: Set Build & Test Environment
run: |
# Only add --oversubscribe arg for openmpi
[ -z ${I_MPI_ROOT+x} ] && echo "ATLAS_RUN_MPI_ARGS=--oversubscribe" >> $GITHUB_ENV
# Add mpirun to path for testing
[ -z ${MPI_HOME+x} ] || echo "${MPI_HOME}/bin" >> $GITHUB_PATH
if [[ "${{matrix.compiler}}" == intel-classic ]]; then
echo "CFLAGS=-diag-disable=10441" >> $GITHUB_ENV
echo "CXXFLAGS=-diag-disable=10441" >> $GITHUB_ENV
echo "FCFLAGS=-diag-disable=10441" >> $GITHUB_ENV
echo "FFLAGS=-diag-disable=10441" >> $GITHUB_ENV
fi
if [[ "${{matrix.compiler}}" == intel ]]; then
echo "CFLAGS=-Rno-debug-disables-optimization" >> $GITHUB_ENV
echo "CXXFLAGS=-Rno-debug-disables-optimization" >> $GITHUB_ENV
fi
- name: Build & Test
id: build-test
uses: ecmwf-actions/build-package@v2
with:
self_coverage: ${{ matrix.coverage }}
force_build: true
cache_suffix: "${{ matrix.build_type }}-${{ env.CACHE_SUFFIX }}"
recreate_cache: ${{ matrix.caching == false }}
dependencies: |
ecmwf/ecbuild
ecmwf/eckit
ecmwf/fckit
dependency_branch: develop
dependency_cmake_options: |
ecmwf/eckit: "-G Ninja -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DENABLE_TESTS=OFF -DENABLE_ECKIT_CMD=OFF -DENABLE_ECKIT_SQL=OFF"
ecmwf/fckit: "-G Ninja -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DENABLE_TESTS=OFF"
cmake_options: "-G Ninja -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DATLAS_BITS_LOCAL=32 ${{ matrix.cmake_options }}"
ctest_options: "${{ matrix.ctest_options }}"
- name: Verify tools
run: |
export PATH=${{ steps.build-test.outputs.bin_path }}:$PATH
echo "+ atlas --info"
atlas --info
echo "+ atlas-grids --list"
atlas-grids --list
- name: Codecov Upload
if: steps.build-test.outputs.coverage_file
uses: codecov/codecov-action@v2
with:
files: ${{ steps.build-test.outputs.coverage_file }}