v1.2.0

Major updates to Spectre in v1.2.0.

Highlights:

• Greatly simplified package dependencies
• Reduction in the size of internally stored datasets. Data moved to https://github.com/ImmuneDynamics/data
• Fast UMAP implementation (run.umap)
• Fast plotting options (fast.colour.plot and fast.multi.plot)
• Fast generation of summary statistics (create.sumtable)
• Batch integration methods with rPCA (run.rpca)
• Minor fixes in CytoNorm and spatial workflows
• Inclusion of CI tests

R session information at time of release:

Mac:

• OS: macOS Ventura 13.5.2
• R version: v4.4.0 (2024-04-24)
• RStudio version: 2024.04.1+748

To install:, please see our instructions on our getting started page.

What's Changed

• Update Spectre rPCA.R by @tomashhurst in #191
• Add CI by @ghar1821 in #192
• Updating v1.1.0 to v1.2.0 by @tomashhurst in #194

Full Changelog: v1.1.0...v1.2.0