Merge pull request #8 from ImagingDataCommons/iteration2

Iteration2
ImagingDataCommons · Sep 20, 2023 · 6c8ffb7 · 6c8ffb7
2 parents 34c31df + f02f788
commit 6c8ffb7
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diff --git a/Dockerfiles/TotalSegmentator/splitWorkflow/task3/Dockerfile b/Dockerfiles/TotalSegmentator/splitWorkflow/task3/Dockerfile
@@ -1,13 +1,14 @@
 FROM python:3.11.2-slim-buster
 
-#ARG GIT_HASH=
+ARG GIT_HASH
 
 # ENV TERM=xterm-256color \
 #     BAMID_URL=https://github.com/Griffan/VerifyBamID/archive \
 #     TINI_VERSION=v0.19.0
 
 LABEL MAINTAINER="IDC <[email protected]>" \
-        GIT_HASH=${GIT_HASH}
+      GIT_HASH=${GIT_HASH}\
+      IMAGE_NAME_ON_DOCKERHUB="imagingdatacommons/totalsegmentator:task3_v5"
 
 # Install some basic system utilities
 RUN apt-get update \

diff --git a/Terra/TotalSegmentator/postProcessing/perFrame.wdl b/Terra/TotalSegmentator/postProcessing/perFrame.wdl
@@ -8,7 +8,7 @@ workflow PerFrameFunctionalGroupsSequence {
    File jsonServiceAccountFile
 
    #Docker Images for each task
-   String docker_PerFrameFunctionalGroupsSequence = "vamsithiriveedhi/extract_perframe_functional_group_sequence"
+   String docker_PerFrameFunctionalGroupsSequence = "imagingdatacommons/extract_perframe_functional_group_sequence"
 
    #Preemptible retries
    Int preemptibleTries_PerFrameFunctionalGroupsSequence = 3
@@ -63,7 +63,7 @@ task PerFrameFunctionalGroupsSequence{
     String zones_PerFrameFunctionalGroupsSequence
  }
  command {
-   wget https://raw.githubusercontent.com/vkt1414/Cloud-Resources-Workflows/main/Notebooks/Totalsegmentator/postProcessingExtractPerframe.ipynb
+   wget https://raw.githubusercontent.com/ImagingDataCommons/Cloud-Resources-Workflows/main/Notebooks/Totalsegmentator/postProcessingExtractPerframe.ipynb
 
    set -o xtrace
    # For any command failures in the rest of this script, return the error.