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Add Fine-tune Simpleshot example notebook #82

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merged 1 commit into from
Mar 7, 2025
Merged

Add Fine-tune Simpleshot example notebook #82

merged 1 commit into from
Mar 7, 2025

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johnbradley
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Adds a notebook that trains a Simpleshot to predicts species based on image embeddings created by BioCLIP. The Simpleshot logic is based on from https://github.com/samuelstevens/biobench by @samuelstevens.

Part of issue #76.

@johnbradley johnbradley requested a review from Copilot January 23, 2025 21:51
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Copilot AI reviewed Jan 23, 2025
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Copilot reviewed 2 out of 2 changed files in this pull request and generated no comments.

hlapp
hlapp approved these changes Jan 27, 2025
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LGTM!

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hlapp commented Jan 27, 2025

Perhaps @samuelstevens is able and willing to specifically look over the Notebook.

@johnbradley
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Colab link for this branch: https://colab.research.google.com/github/Imageomics/pybioclip/blob/fine-tune-ss/examples/FineTuneSimpleShot.ipynb

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In Cell ID: 71d4a8a2-1a9d-4c7c-8ca5-0e6083ffd60e, I assume it's based on code from biobench, not directly from?
Screenshot 2025-03-06 at 1 07 11 PM

@johnbradley @samuelstevens
Add Fine-tune Simpleshot example notebook
43b53b3 
Adds a notebook that trains a Simpleshot to predicts species based
on image embeddings created by BioCLIP. The Simpleshot logic
is based on from https://github.com/samuelstevens/biobench by
@samuelstevens.

Part of issue #76.

Co-authored-by: Samuel Stevens <[email protected]>
@johnbradley johnbradley merged commit 5b24429 into main Mar 7, 2025
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@johnbradley johnbradley deleted the fine-tune-ss branch March 7, 2025 14:25
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@hlapp hlapp hlapp approved these changes

@egrace479 egrace479 egrace479 approved these changes

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@johnbradley @hlapp @egrace479