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Theo Knijnenburg committed Jul 1, 2015
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93 changes: 93 additions & 0 deletions Data/CDH4_Pvalues.tsv
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gene pvalue with CHD4
AP1B1 0.0590201080172
AR 1.03276140576e-06
ATP5J 6.77641507611e-18
BMP4 0.199067333899
BRCA1 9.01571137606e-11
CDKN1B 0.232273679636
CEBPB 0.000141253754462
AP1B1 0.0590201080172
AR 1.03276140576e-06
ATP5J 6.77641507611e-18
BMP4 0.199067333899
BRCA1 9.01571137606e-11
CDKN1B 0.232273679636
CEBPB 0.000141253754462
COL18A1 0.0092896638678
CREBBP 1.77418948089e-29
DSCAM 0.00103038612044
EP300 2.1379620895e-17
ESR1 0.663743070402
FGF7 0.00807235030249
FOS 0.350751873953
FOXA3 0.599791076256
FURIN 0.256448403652
GPC3 0.762079010025
HDAC1 0.262421854338
HDAC4 3.04789498963e-09
JUN 0.136144468247
MAPK9 0.0779830110523
MDM2 0.001706082389
NCOA3 1.10917481526e-12
NFIA 1.18576874817e-05
NFIB 0.001
NFIC 1.70215850839e-09
NKX3-1 0.58748935253
NR2F2 0.639734835483
NRIP1 0.622300285169
PIAS1 0.00134896288259
PIAS2 0.336511569375
PISD 0.000135518941235
POU2F1 2.18272991184e-08
PRDM15 2.59417936212e-16
PTCH1 3.11171633711e-10
RANBP2 1.59587914724e-20
RANGAP1 0.00111943788347
RAN 1.25314117494e-08
SERPINA1 0.000597035286584
SFTPD 0.590201080172
SHH 0.935405674148
SOD1 7.19448978004e-11
SP1 7.9250133048e-17
SUMO1 1.03514216668e-11
XBP1 3.84591782045e-06
XPO1 0.116412602941
COL18A1 0.0092896638678
CREBBP 1.77418948089e-29
DSCAM 0.00103038612044
EP300 2.1379620895e-17
ESR1 0.663743070402
FGF7 0.00807235030249
FOS 0.350751873953
FOXA3 0.599791076256
FURIN 0.256448403652
GPC3 0.762079010025
HDAC1 0.262421854338
HDAC4 3.04789498963e-09
JUN 0.136144468247
MAPK9 0.0779830110523
MDM2 0.001706082389
NCOA3 1.10917481526e-12
NFIA 1.18576874817e-05
NFIB 0.001
NFIC 1.70215850839e-09
NKX3-1 0.58748935253
NR2F2 0.639734835483
NRIP1 0.622300285169
PIAS1 0.00134896288259
PIAS2 0.336511569375
PISD 0.000135518941235
POU2F1 2.18272991184e-08
PRDM15 2.59417936212e-16
PTCH1 3.11171633711e-10
RANBP2 1.59587914724e-20
RANGAP1 0.00111943788347
RAN 1.25314117494e-08
SERPINA1 0.000597035286584
SFTPD 0.590201080172
SHH 0.935405674148
SOD1 7.19448978004e-11
SP1 7.9250133048e-17
SUMO1 1.03514216668e-11
XBP1 3.84591782045e-06
XPO1 0.116412602941
7 changes: 7 additions & 0 deletions Data/GLYPICAN 3 NETWORK.TransformedData.tsv

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11 changes: 11 additions & 0 deletions Data/RandomData.tsv
Original file line number Diff line number Diff line change
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Independent Var 0.974952407187 0.216845793732 -0.42671311637 -1.39690094276 0.7297205784 -0.522608008441 -0.319299026609 -0.312367444322 -0.674365698935 2.13343265393 0.386385159743 -1.04594100117 -0.840339627869 0.55769963178 1.9434874245 -2.39463046415 0.677083834302 -0.827640667901 0.473838767367 0.704234517154 -1.9914117737 0.109653510595 -0.508384050745 -0.114148742106 2.60664484676
Dependent Var1 0.0234605800613 -0.122024610228 -0.878725889412 -1.7712895227 1.31921272506 -1.54314845433 -0.509459253608 -0.126726820522 2.46487506394 -0.109678124509 -0.401287729265 -0.521161640915 0.0961529687682 -0.177729652051 0.194941554322 -1.4011803854 -0.58268623986 -0.283290101937 -0.335416994117 0.863751510598 0.833345874822 0.374713851511 -0.0515310304852 -0.914649977887 -0.190121985072
Dependent Var2 0.522341696823 0.329965747653 -1.52552462553 -1.37442308718 -0.544083025123 0.627301686875 -0.483808733019 -0.857861031064 0.970187784248 -2.02589932893 0.893319479873 -1.22676062196 -0.505138802725 -0.266630412312 -0.0309485247094 -0.316481794643 -0.130441517301 1.02908875371 0.202677550548 0.265405103001 0.51985324966 0.21140068971 0.252860753366 1.44805743707 1.17084078706
Dependent Var3 -0.788431523321 0.692512173227 -0.897347807607 0.0760479243446 -0.793195769188 -1.90150281779 1.49485442901 -1.51028697483 -0.110161547131 -0.425616560175 0.937341780981 -0.419322266738 -0.792592773691 0.0806701095381 -0.985245647006 0.396735556543 0.380807331445 -0.158208396855 -0.206785612149 -2.30737073994 0.708557102027 0.424369923858 -0.66999890241 0.595663693887 -0.259160181137
Dependent Var4 -0.962207226118 -0.397399101995 -1.6021218877 -0.751260556096 -0.472038054272 -1.90293939614 -0.131658546458 -1.65014920164 0.396032718923 -1.91859691317 0.657649343227 1.17514053493 -0.0713378416701 -0.286797842411 0.427510974009 0.017138025394 -0.946090847476 -0.111746559803 1.82026289256 0.175784488113 -0.48259115587 -0.861069130964 -0.198834391734 0.503488482989 0.705649618459
Dependent Var5 -0.35211247306 -0.886921804402 -1.56098934068 -1.59431688505 1.90563557683 -1.35986991231 0.911240507898 -0.859609423243 1.36632215188 0.533127252952 -0.124724475832 0.69646681717 0.587064570061 -1.17128152986 0.766396636658 0.656205722821 -1.78786930306 0.424559451616 1.92969172109 1.13901966601 -0.214593615348 -0.245575934653 1.20109036104 0.577147193849 -0.247225400823
Dependent Var6 -0.286246182982 1.15436083286 0.391594260976 -0.259258722252 -0.215297187258 -1.75327452219 2.77707930002 -1.01266803587 -0.369809857396 -0.903247819009 0.226025885251 -0.236387108282 0.808791163562 -1.16454579825 -0.661018404337 0.406448537101 -0.873840431662 -0.390060141976 1.1895637454 -1.60297494212 1.00398455599 -1.1081176532 0.800511300633 0.542188885729 0.396512995182
Dependent Var7 0.0383967564271 -0.689928741125 -0.134477334647 -1.07849108435 -2.37655308552 -0.834415559794 -0.610157411144 -1.2265236762 -0.912390952175 -0.224408787215 -0.525192875137 0.37515526386 0.473575251315 0.159657775735 -0.459698083122 -0.596462385082 0.493707468634 0.280928611678 1.64414771434 -0.793318694645 1.1223318592 0.235413867084 1.46096523543 0.197367956116 -0.548839763144
Dependent Var8 -0.156542307847 0.320735476137 -2.3499139336 -1.28521669283 0.341223478413 -0.937395214496 0.0408172999237 0.268793725857 3.10910073072 -0.938534848094 -0.156856779887 1.05972199671 2.45260780076 -0.452158584552 0.593739023422 0.666358232946 0.634734692889 -0.47663992972 0.348149028891 -1.0588033633 -0.611742927733 -0.0265263238503 0.764805824527 -0.605827452791 -0.128253996915
Dependent Var9 1.2030677306 1.71553840093 1.37197895202 -1.4221964816 -0.0389239885681 -0.590956462659 -1.01110672662 -1.52195544282 0.907999098059 -0.816298080656 0.120945298471 -0.213105731697 1.67564499981 -0.0839053133479 0.466835130063 -1.1644275397 0.410936044675 2.09462852796 0.586820962546 -1.71781402262 -0.724787281928 -0.142721497134 -0.0407385256279 1.23804784973 -0.209993411735
Dependent Var10 -0.852457214461 -1.73395878345 -1.36374893017 -0.00288078067044 -0.255917111626 -0.96117611715 0.707724879631 -0.953345331781 0.917471000567 0.612172573422 0.770530045757 -0.634209852771 1.57104163333 -1.79274967469 0.0163405510763 0.235762622446 0.0692915817337 0.57568032449 1.03034118287 -0.530614473576 -2.11866791693 -0.594950296952 0.747611436374 1.79836802985 1.2659588986
11 changes: 11 additions & 0 deletions Data/RandomData_withoutheaders.tsv
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
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0.02346058 -0.12202461 -0.878725889 -1.771289523 1.319212725 -1.543148454 -0.509459254 -0.126726821 2.464875064 -0.109678125 -0.401287729 -0.521161641 0.096152969 -0.177729652 0.194941554 -1.401180385 -0.58268624 -0.283290102 -0.335416994 0.863751511 0.833345875 0.374713852 -0.05153103 -0.914649978 -0.190121985
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-0.788431523 0.692512173 -0.897347808 0.076047924 -0.793195769 -1.901502818 1.494854429 -1.510286975 -0.110161547 -0.42561656 0.937341781 -0.419322267 -0.792592774 0.08067011 -0.985245647 0.396735557 0.380807331 -0.158208397 -0.206785612 -2.30737074 0.708557102 0.424369924 -0.669998902 0.595663694 -0.259160181
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