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Commits on Dec 9, 2016

  1. added intellij project files in gitignore; removed .gitignore in bin;… 

    … updated dependancies for each file
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  2. no compliled .class files should be committed

    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  3. updated gitignore

    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  4. TaggedImageProcessor commented to avoid compilation error (TODO tagge… 

    …d); minor import errors corrected
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  5. acquisition handle updated to process new Image object in mm2 rather … 

    …than tagged image in mm
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  6. error logging is no longer going through the mmstuio object but a sep… 

    …arated ReportingUtil tool
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  7. MMStudio metadate are no longer stored in MMOption object. It is now … 

    …deleted and replaced by storing metadata in different managers (such as acquisition manager, snaplive manager etc.)
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  8. patcher update, the live mode is no longer managed by MMStudio main o… 

    …bject. There is a snapLiveManager object for this job
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  9. path refactorized in patcher

    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  10. logerror from reportingutils

    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  11. Revert "acquisition handle updated to process new Image object in mm2… 

    … rather than tagged image in mm"

This reverts commit 70ac2e1.
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  12. Revert "error logging is no longer going through the mmstuio object b… 

    …ut a separated ReportingUtil tool"

This reverts commit 4afe9c1.
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  13. Revert "MMStudio metadate are no longer stored in MMOption object. It… 

    … is now deleted and replaced by storing metadata in different managers (such as acquisition manager, snaplive manager etc.)"

This reverts commit 9201b92.
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  14. path refactorized in patcher

    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  15. updates related to the dreprecaed MMOption and getting/setting MM opt… 

    …ions from different parts of mm2
    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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  16. ignore icy auto-downloaded items

    @BioinfoTongLI
    BioinfoTongLI committed Dec 9, 2016
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