implemented tox

setup.cfg

@@ -0,0 +1,116 @@
+##########################
+# Setup.py Configuration #
+##########################
+[metadata]
+name = kgcl
+version = 0.0.10
+description = Knowledge Graph Change Language
+long_description = file: README.md
+long_description_content_type = text/markdown
+
+# URLs associated with the project
+url = https://github.com/cmungall/knowledge-graph-change-language
+download_url = https://github.com/cmungall/knowledge-graph-change-language/releases
+project_urls =
+    Bug Tracker = https://github.com/cmungall/knowledge-graph-change-language/issues
+    Source Code = https://github.com/cmungall/knowledge-graph-change-language
+    # Documentation = https://something.github.io/knowledge-graph-change-language
+
+# Author information
+author = Christian Kindermann
+author_email = [email protected]
+maintainer = Chris Mungall
+maintainer_email = [email protected]
+
+# License Information
+license = MIT
+license_file = LICENSE
+
+# Search tags
+classifiers =
+    Programming Language :: Python
+    Programming Language :: Python :: 3.9
+    Programming Language :: Python :: 3.8
+    Programming Language :: Python :: 3.7
+    Programming Language :: Python :: 3 :: Only
+
+keywords =
+    Ontologies
+    Knowledge Graph
+
+[options]
+install_requires =
+    linkml~=1.0.3
+    lark~=0.11.3
+
+include_package_data = True
+
+# Random options
+zip_safe = false
+
+python_requires = >=3.7
+
+[options.package_data]
+schema = schema/*
+jsonld = *.jsonld
+# * = *.jsonld, _folder_/*.jsonld
+
+[options.extras_require]
+test =
+    pytest
+docs =
+    sphinx
+    sphinx-rtd-theme
+    sphinx-autodoc-typehints
+    sphinx-click
+
+######################
+# Doc8 Configuration #
+# (doc8.ini)         #
+######################
+[doc8]
+max-line-length = 120
+
+#########################
+# Flake8 Configuration  #
+# (.flake8)             #
+#########################
+[flake8]
+ignore =
+    E501 # Line length
+    W503 # Line break before binary operator (flake8 is wrong)
+    S408 # don't worry about unsafe xml
+    S318 # don't worry about unsafe xml
+    S310 # TODO remove this later and switch to using requests
+    B018 # This is 'useless' statements which are new atm.
+exclude =
+    python/kgcl.py
+
+
+##########################
+# Darglint Configuration #
+##########################
+[darglint]
+docstring_style = sphinx
+strictness = short
+
+####################
+# Deployment tools #
+####################
+
+[testenv:build]
+skip_install = true
+deps =
+    wheel
+    setuptools
+commands =
+    python setup.py -q sdist bdist_wheel
+
+[testenv:release]
+skip_install = true
+deps =
+    {[testenv:build]deps}
+    twine >= 1.5.0
+commands =
+    {[testenv:build]commands}
+    twine upload --skip-existing dist/*

setup.py

@@ -1,36 +1,8 @@
-from setuptools import setup
+# -*- coding: utf-8 -*-
 
-with open("README.md", "r") as fh:
-    long_description = fh.read()
+"""The setup module."""
 
-setup(
-    name="kgcl",
-    version="0.0.10",
-    description="Knowledge Graph Change Language",
-    packages=[
-        "kgcl.apply",
-        "kgcl.diff",
-        "kgcl.grammar",
-        "kgcl.model",
-    ],
-    # py_modules=[
-    #    "kgcl",
-    #    "kgcl_diff",
-    #    "pretty_print_kgcl",
-    # ],
-    package_dir={"kgcl": "./kgcl"},
-    package_data={"kgcl.grammar": ["kgcl.lark"]},
-    classifiers=[
-        "Programming Language :: Python :: 3.8",
-    ],
-    long_description=long_description,
-    long_description_content_type="text/markdown",
-    install_requires=[
-        "linkml ~= 1.0.3",
-        "lark ~= 0.11.3",
-    ],
-    extras_require={"dev": ["pytest>=3.7"]},
-    url="https://github.com/ckindermann/knowledge-graph-change-language",
-    author="Christian Kindermann",
-    author_email="[email protected]",
-),
+import setuptools
+
+if __name__ == "__main__":
+    setuptools.setup()

tox.ini

@@ -0,0 +1,59 @@
+# Tox (http://tox.testrun.org/) is a tool for running tests
+# in multiple virtualenvs. This configuration file will run the
+# test suite on all supported python versions. To use it, "pip install tox"
+# and then run "tox" from this directory.
+
+[tox]
+envlist =
+    lint
+    flake8
+    mypy
+    manifest
+    py
+
+[testenv]
+commands =
+    pytest
+extras =
+    test
+description = Run unit tests with pytest. This is a special environment that does not get a name, and
+              can be referenced with "py".
+
+[testenv:lint]
+skip_install = true
+commands =
+    black kgcl/ tests/ setup.py
+    isort kgcl/ tests/ setup.py
+deps =
+    isort
+    black
+description = Run code formatters and linters.
+
+[testenv:flake8]
+skip_install = true
+commands =
+    flake8 sssom/ tests/ setup.py
+deps =
+    flake8
+    flake8-black
+    flake8-colors
+    bandit==1.7.2
+    flake8-bandit
+    pep8-naming
+    flake8-bugbear
+    flake8-isort
+    flake8-docstrings
+    pydocstyle
+    darglint
+description = Run the flake8 code quality checker.
+
+[testenv:mypy]
+deps = mypy
+skip_install = true
+commands = mypy --install-types --non-interactive --ignore-missing-imports sssom/ setup.py
+description = Run the mypy tool to check static typing on the project.
+
+[testenv:manifest]
+deps = check-manifest
+skip_install = true
+commands = check-manifest