setup for pypi

- update requirements - script to generate requirements - push to pypi
IN-CORE · Jun 25, 2022 · 836edb6 · 836edb6
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diff --git a/.github/workflows/pypi.yaml b/.github/workflows/pypi.yaml
@@ -0,0 +1,81 @@
+name: Publish Python package
+
+on:
+  release:
+    types:
+      - published
+
+  pull_request:
+
+jobs:
+  publish:
+    name: Build and publish python packages
+    runs-on: ubuntu-18.04
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: get release info
+        id: release_info
+        run: |
+          if [ "${{ github.event.release.tag_name }}" != "" ]; then
+            version=$(echo ${{ github.event.release.tag_name }} | sed 's/^v//')
+          else
+            version="$(awk -F= '/^PACKAGE_VERSION/ { print $2}' pyincore-viz/globals.py | sed 's/[ "]//g').${{ github.run_number }}"
+          fi
+          echo "VERSION=${version}" >> $GITHUB_ENV
+          echo "VERSION=${version}"
+          ./version.sh ${version}
+
+          testing=$(echo $version | sed 's/[0-9\.]//')
+          if [ "$testing" == "" ]; then
+            echo "REPO_URL=" >> $GITHUB_ENV
+            echo "TOKEN=${{ secrets.PYPI_API_TOKEN }}" >> $GITHUB_ENV
+          else
+            echo "REPO_URL=https://test.pypi.org/legacy/" >> $GITHUB_ENV
+            echo "TOKEN=${{ secrets.TEST_PYPI_API_TOKEN }}" >> $GITHUB_ENV
+          fi
+
+      - name: Set up Python 3.8
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+
+      - name: Install dependencies
+        run: python -m pip install --upgrade pip setuptools wheel
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+
+      - name: Cache pip
+        uses: actions/cache@v2
+        with:
+          # This path is specific to Ubuntu
+          path: ~/.cache/pip
+          # Look to see if there is a cache hit for the corresponding requirements file
+          key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-
+            ${{ runner.os }}-
+
+      - name: Build dist file
+        run: |
+          python setup.py sdist bdist_wheel
+
+      - name: Publish distribution to PyPI
+        if: github.event_name == 'release'
+        uses: pypa/gh-action-pypi-publish@master
+        with:
+          password: ${{ env.TOKEN }}
+          repository_url: ${{ env.REPO_URL }}
+
+      - name: Upload binaries to release
+        if: github.event_name == 'release'
+        uses: svenstaro/upload-release-action@v2
+        with:
+          repo_token: ${{ secrets.GITHUB_TOKEN }}
+          file: dist/pyincore-viz-${{ env.VERSION }}*
+          file_glob: true
+          overwrite: true
diff --git a/.github/workflows/requirements.yaml b/.github/workflows/requirements.yaml
@@ -0,0 +1,37 @@
+name: pyclowder
+
+# This will check to see if there are new requirements and will
+# automatically create a pull request.
+on:
+  push:
+    branches:
+      - main
+
+  schedule:
+    - cron: '0 0 * * *'
+
+# Certain actions will only run when this is the main repo.
+env:
+  MAIN_REPO: IN-CORE/pyincore-viz
+
+jobs:
+  pyclowder:
+    runs-on: ubuntu-latest
+    if: github.repository == env.MAIN_REPO
+
+    steps:
+      - uses: actions/checkout@v3
+
+      # check all requirements
+      - name: requirements check
+        run: |
+          ./requirements.sh
+
+      # try and create a PR
+      - name: create PR if needed
+        uses: peter-evans/create-pull-request@v3
+        with:
+          commit-message: "Updated requirements"
+          title: "Updated requirements"
+          reviewers: IN-CORE/core-dev
+          delete-branch: true
diff --git a/README.rst b/README.rst
@@ -0,0 +1,9 @@
+This package is designed for visualizing the output of pyIncore analyses.
+pyIncore is a Python package to analyze and visualize various hazard
+(earthquake, tornado, hurricane etc.) scenarios developed
+by the Center for Risk-Based Community Resilience Planning team from NCSA.
+The development is part of NIST sponsored IN-CORE (Interdependent Networked Community
+Resilience Modeling Environment) initiative.
+pyIncore allows users to apply hazards on infrastructure in selected areas.
+Python framework acceses underlying data through local or remote services
+and facilitates moving and synthesizing results.
diff --git a/environment.yml b/environment.yml
@@ -0,0 +1,123 @@
+name: base
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - ipopt>=3.11
+  - numpy>=1.16
+  - affine==2.3.1
+  - appnope==0.1.3
+  - argon2-cffi==21.3.0
+  - argon2-cffi-bindings==21.2.0
+  - asttokens==2.0.5
+  - attrs==21.4.0
+  - backcall==0.2.0
+  - beautifulsoup4==4.11.1
+  - bleach==5.0.0
+  - branca==0.5.0
+  - certifi==2022.6.15
+  - cffi==1.15.0
+  - charset-normalizer==2.0.12
+  - click==8.1.3
+  - click-plugins==1.1.1
+  - cligj==0.7.2
+  - contextily==1.2.0
+  - cycler==0.11.0
+  - debugpy==1.6.0
+  - decorator==5.1.1
+  - defusedxml==0.7.1
+  - deprecated==1.2.13
+  - ecdsa==0.17.0
+  - entrypoints==0.4
+  - executing==0.8.3
+  - fastjsonschema==2.15.3
+  - fiona==1.8.21
+  - fonttools==4.33.3
+  - geographiclib==1.52
+  - geopandas==0.11.0
+  - geopy==2.2.0
+  - idna==3.3
+  - iniconfig==1.1.1
+  - ipykernel==6.15.0
+  - ipyleaflet==0.16.0
+  - ipython==8.4.0
+  - ipython-genutils==0.2.0
+  - ipywidgets==7.7.1
+  - jedi==0.18.1
+  - jinja2==3.1.2
+  - joblib==1.1.0
+  - jsonschema==4.6.0
+  - jupyter-client==7.3.4
+  - jupyter-core==4.10.0
+  - jupyterlab-pygments==0.2.2
+  - jupyterlab-widgets==1.1.1
+  - kiwisolver==1.4.3
+  - lxml==4.9.0
+  - markupsafe==2.1.1
+  - matplotlib==3.5.2
+  - matplotlib-inline==0.1.3
+  - mercantile==1.2.1
+  - mistune==0.8.4
+  - munch==2.5.0
+  - nbclient==0.6.4
+  - nbconvert==6.5.0
+  - nbformat==5.4.0
+  - nest-asyncio==1.5.5
+  - networkx==2.8.4
+  - notebook==6.4.12
+  - osgeo==0.0.1
+  - owslib==0.26.0
+  - packaging==21.3
+  - pandas==1.4.3
+  - pandocfilters==1.5.0
+  - parso==0.8.3
+  - pexpect==4.8.0
+  - pickleshare==0.7.5
+  - pillow==9.1.1
+  - pluggy==1.0.0
+  - ply==3.11
+  - prometheus-client==0.14.1
+  - prompt-toolkit==3.0.29
+  - psutil==5.9.1
+  - ptyprocess==0.7.0
+  - pure-eval==0.2.2
+  - py==1.11.0
+  - pyasn1==0.4.8
+  - pycodestyle==2.8.0
+  - pycparser==2.21
+  - pygments==2.12.0
+  - pyincore==1.4.2rc5
+  - pyomo==6.4.1
+  - pyparsing==3.0.9
+  - pyproj==3.2.1
+  - pyrsistent==0.18.1
+  - pytest==7.1.2
+  - python-dateutil==2.8.2
+  - python-jose==3.3.0
+  - pytz==2022.1
+  - pyyaml==6.0
+  - pyzmq==23.2.0
+  - rasterio==1.2.10
+  - requests==2.28.0
+  - rsa==4.8
+  - rtree==1.0.0
+  - scipy==1.8.1
+  - send2trash==1.8.0
+  - shapely==1.8.2
+  - six==1.16.0
+  - snuggs==1.4.7
+  - soupsieve==2.3.2.post1
+  - stack-data==0.3.0
+  - terminado==0.15.0
+  - tinycss2==1.1.1
+  - tomli==2.0.1
+  - tornado==6.1
+  - traitlets==5.3.0
+  - traittypes==0.2.1
+  - urllib3==1.26.9
+  - wcwidth==0.2.5
+  - webencodings==0.5.1
+  - widgetsnbextension==3.6.1
+  - wntr==0.4.2
+  - wrapt==1.14.1
+  - xyzservices==2022.6.0
diff --git a/recipes/meta.yaml b/recipes/meta.yaml
@@ -24,35 +24,31 @@ requirements:
   build:
     - python>=3.6
     - pip
-    - numpy 1.16
+    - numpy>=1.16
 
   host:
     - python>=3.6
     - pip
-    - numpy 1.16
+    - numpy>=1.16
 
   run:
     - python>=3.6
     - {{ pin_compatible('numpy') }}
-    - branca==0.3.1
-    - ipyleaflet<0.13.7,>=0.13.4
-    - ipywidgets<8,>=7.6.0
-    - pandas>=0.24.1
-    - geopandas>=0.6.1
-    - rasterio>=1.1.3
-    - descartes>=1.1.0
-    - contextily>=1.0.0
-    - numpy>=1.16.1
-    - scipy>=1.2.0   
-    - networkx>=2.2
-    - owslib>=0.17.1
-    - matplotlib>=2.1.0
-    - plotly>=3.6.0
-    - pytest>=3.9.0
-    - lxml>=4.6.3
-    - palettable>=3.3.0
-    - mplcursors>=0.5.1
-    - pyincore>=1.0.0
+    - branca==0.5.0
+    - contextily==1.2.0
+    - deprecated==1.2.13
+    - geopandas==0.11.0
+    - ipyleaflet==0.16.0
+    - ipywidgets==7.7.1
+    - lxml==4.9.0
+    - matplotlib==3.5.2
+    - networkx==2.8.4
+    - osgeo==0.0.1
+    - owslib==0.26.0
+    - pandas==1.4.3
+    - pillow==9.1.1
+    - pyincore==1.4.2rc5
+    - rasterio==1.2.10
 
 test:
   # Python imports
@@ -62,6 +58,9 @@ test:
   requires:
     # Put any additional test requirements here.  For example
     - pytest>=3.9
+    - pycodestyle==2.8.0
+    - python-jose==3.3.0
+
   commands:
     # You can put built-in test commands to be run here.  Use this to test that the entry points work.
      python -c "import pyincore_viz; print('SUCCESS')" #; pyincore.test_client()"

diff --git a/requirements.in b/requirements.in
@@ -0,0 +1,19 @@
+branca
+contextily
+deprecated
+geopandas
+ipyleaflet
+ipywidgets
+lxml
+matplotlib
+networkx
+numpy
+osgeo
+owslib
+pandas
+pillow
+pyincore
+rasterio
+pycodestyle
+pytest
+python-jose