fix github action by updating pytest from conda to mamba (#129) #116
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| name: PYTEST | |
| on: | |
| push: | |
| env: | |
| MAIN_REPO: IN-CORE/pyincore-viz | |
| jobs: | |
| #----------------------------------------------------------------------- | |
| # UNIT TEST | |
| # ---------------------------------------------------------------------- | |
| unit-test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| vars: [ { python-version: '3.8', sleep: '0s' }, { python-version: '3.9', sleep: '60s' } ] | |
| # { python-version: '3.10', sleep: '120s' }, { python-version: '3.11', sleep: '180s' } ] | |
| name: Python ${{ matrix.vars.python-version }} Test | |
| steps: | |
| - name: Checkout source code | |
| uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('environment.yml') }} | |
| - name: Install micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| create-args: >- | |
| python=${{ matrix.vars.python-version }} | |
| pytest | |
| environment-file: environment.yml | |
| generate-run-shell: true | |
| - name: Sleep for ${{ matrix.vars.sleep }} to avoid multiple pytests run concurrently | |
| uses: jakejarvis/wait-action@master | |
| with: | |
| time: ${{ matrix.vars.sleep }} | |
| - name: Run pyincore viz tests with pytest | |
| run: | | |
| echo "${{secrets.PYTEST_USER_TOKEN}}" > tests/pyincore_viz/.incorepw | |
| python -m pytest tests/pyincore_viz/test_pyincore_viz.py | |
| shell: micromamba-shell {0} | |
| - name: Run analysis viz tests with pytest | |
| run: | | |
| echo "${{secrets.PYTEST_USER_TOKEN}}" > tests/pyincore_viz/.incorepw | |
| python -m pytest tests/pyincore_viz/test_analysis_viz.py | |
| shell: micromamba-shell {0} |