feat: lidc preparation

IML-DKFZ · Oct 2, 2023 · f7324fb · f7324fb
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diff --git a/docs/datasets.md b/docs/datasets.md
@@ -116,7 +116,9 @@ Download the dataset from their website and extract to `$DATASET_ROOT_DIR/lidc_i
 
 - [LIDC-IDRI](https://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=1966254)
 
-Then run the data preprocessing:
+Prepare the dataset by following the instructions in [the separate LIDC readme](../fd_shifts/loaders/preparation/lidc-idri/README.md).
+
+Finaly, run the data preprocessing:
 
 ```bash
 fd_shifts prepare --dataset lung_ct

diff --git a/fd_shifts/loaders/preparation/__init__.py b/fd_shifts/loaders/preparation/__init__.py
@@ -1,5 +1,6 @@
 from fd_shifts.loaders.preparation.dermoscopy import prepare_dermoscopy
+from fd_shifts.loaders.preparation.lung_ct import prepare_lidc
 from fd_shifts.loaders.preparation.microscopy import prepare_rxrx1
 from fd_shifts.loaders.preparation.xray import prepare_xray
 
-__all__ = ["prepare_rxrx1", "prepare_dermoscopy", "prepare_xray"]
+__all__ = ["prepare_rxrx1", "prepare_dermoscopy", "prepare_xray", "prepare_lidc"]