add files for github actions

.github/workflows/actions.yml

@@ -0,0 +1,56 @@
+name: install-and-test-workflow
+on: [push]
+jobs:
+  # install-and-test:
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #   - uses: actions/checkout@v4
+  #   - name: Set up Python 3.9
+  #     uses: actions/setup-python@v5
+  #     with:
+  #       python-version: 3.9
+  #   - name: Install dependencies
+  #     run: |
+  #       pip install --upgrade pip
+  #       pip install '.[dev]' --index-url https://gitlab.mpcdf.mpg.de/api/v4/projects/2187/packages/pypi/simple
+  #       pip install coverage coveralls
+  #   - name: Test with pytest
+  #     run: |
+  #       python -m coverage run -m pytest -sv
+  #   - name: Submit to coveralls
+  #     continue-on-error: true
+  #     env:
+  #       GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  #     run: |
+  #       coveralls --service=github
+  # build-and-install:
+  #   runs-on: ubuntu-latest
+  #   steps:
+  #   - uses: actions/checkout@v4
+  #   - name: Set up Python 3.9
+  #     uses: actions/setup-python@v5
+  #     with:
+  #       python-version: 3.9
+  #   - name: Build the package
+  #     run: |
+  #       pip install --upgrade pip
+  #       pip install build
+  #       python -m build --sdist
+  #   - name: Install the package
+  #     run: |
+  #       pip install dist/*.tar.gz --index-url https://gitlab.mpcdf.mpg.de/api/v4/projects/2187/packages/pypi/simple
+  ruff-linting:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: chartboost/ruff-action@v1
+        with:
+          args: "check ."
+  # to enable auto-formatting check, uncomment the following lines below
+  ruff-formatting:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: chartboost/ruff-action@v1
+        with:
+          args: "format . --check"

.github/workflows/mkdocs-deploy.yml

@@ -0,0 +1,26 @@
+name: Deploy MkDocs Site
+
+on:
+  push:
+    branches:
+      - main  # Triggers deployment on push to the main branch
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+permissions:
+  contents: write
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout Repository
+        uses: actions/checkout@v4
+
+      - name: Deploy docs
+        uses: mhausenblas/mkdocs-deploy-gh-pages@master
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          CONFIG_FILE: mkdocs.yml
+          REQUIREMENTS: requirements_docs.txt

src/nomad_ikz_plugin/movpe/schema.py

@@ -26,6 +26,12 @@
 from nomad.datamodel.metainfo.workflow import (
     Link,
 )
+
+# from nomad.datamodel.context import ClientContext, ServerContext
+# from nomad.app.v1.models.models import User
+# from nomad.files import UploadFiles
+# from nomad.app.v1.routers.uploads import get_upload_with_read_access
+
 from nomad.metainfo import (
     Quantity,
     Reference,
@@ -1295,8 +1301,18 @@ def normalize(self, archive, logger):
 
                         if (
                             sample.substrate is not None
-                            and sample.substrate.reference is not None
+                            and sample.substrate.reference.m_proxy_value is not None
                         ):
+                            # sub_context = ServerContext(
+                            #         get_upload_with_read_access(
+                            #             matches["upload_id"][0],
+                            #             User(
+                            #                 is_admin=True,
+                            #                 user_id=archive.metadata.main_author.user_id,
+                            #             ),
+                            #             include_others=True,
+                            #         )
+                            #    )  # Upload(upload_id=matches["upload_id"][0]))
                             if hasattr(
                                 getattr(sample.substrate.reference, 'substrate'),
                                 'name',