v0.10.0

0.10.0 (2024-08-20)

Features

• add all-filter for reduced analysis (#134) (c8e2b56)
• all filter fit for DADA2 (#132) (4cd0418)
• empress phylogenetic tree (#139) (775c626)
• longitudinal with LME and environment fix (#133) (6169fd8)

Bug Fixes

• all filter (#130) (6f75ef9)
• quick again (#136) (6b28c85)

v0.9.0

0.9.0 (2024-05-06)

Features

• html visualizations (#124) (9f77e54)
• rank abundance and complete filter information (#127) (408e433)

Bug Fixes

• all filter quick fix (#128) (294854c)
• folder additions (#129) (8fcb406)

v0.8.0

0.8.0 (2024-03-18)

Features

• Rescript db qiime update (#122) (22b5519)

Bug Fixes

• added databases to snakefile (#119) (70e8b12)
• Rescript fix (#121) (9542bd2)

v0.7.0

0.7.0 (2024-02-16)

Features

• visual update (#115) (1f2d2bf)

Bug Fixes

• multiqc version (#117) (1a15959)

v0.6.1

0.6.1 (2023-11-30)

Bug Fixes

• metadata fix (#113) (ffe4dd2)
• quick fix (#111) (da9fca1)

v0.6.0

0.6.0 (2023-11-16)

Features

• longitudinal analysis (#109) (7c6e7f7)

Bug Fixes

• bowtie code fix (#103) (1fa01fd)
• codefix (#100) (6d87af8)
• errors fixed (#110) (f5340a4)
• fixed DADA2 usage (#104) (4213aa0)

v0.5.0

0.5.0 (2023-08-08)

Features

• added filtering with bowtie (#93) (56a0ab6)
• Bowtie2 for single end (#95) (1268db6)
• heatmap distances (#88) (b437fa9)
• print config params to output html (#91) (4cf85c0)
• rarefaction change (#83) (aad395e)
• set outpath (#96) (9b9d231)
• Songbird (#57) (64e6942)

Bug Fixes

• caching (#89) (b8ae16e)
• changed sample swap for file (#82) (daa67e3)
• filepath fix (#92) (a53e573)
• human count error (#80) (7d42c16)
• snakefile fix (#98) (01f2d1c)

v0.4.0

0.4.0 (2023-03-14)

Features

• Added README and new test (#77) (ac2e037)
• Filtering statistics added (#75) (6539af4)
• list as ancom input (#70) (904f897)
• shorter version of workflow for little information (#74) (0c7a91f)

Bug Fixes

• changed dada2-input for functionality (#72) (bd172dc)
• changed primer and adapter trimming (#68) (d27b73c)
• human_count error (#79) (1db80f5)
• silva download change (#78) (0d47b84)
• test for sample names and error correction (#73) (4f380f5)

v0.3.0

0.3.0 (2022-10-04)

Features

• added all beta-significance plots (#56) (e137555)
• Added alpha correlation (#64) (c39f46c)
• added DADA2 option to pipeline (#47) (efc3ab0)
• alpha beta analysis added (#50) (267f1cb)
• ancom (#58) (93548b2)
• merg staggered reads (#61) (bde51b4)
• metadata reader (#52) (46b7301)
• parameters printed to csv (#66) (209a0f9)
• possibility to manually exclude metadata columns (#67) (6758bf5)
• ReadMe-Update (#51) (2bbe88d)

Bug Fixes

• beta analysis (#65) (e44e757)
• compressed kraken output (#55) (2f2cffc)
• filled missing values with 0, added DADA2 for single end data(#54) (b474957)
• log and verbose information now written to all logs (#49) (2c1ed55)

v0.2.0

0.2.0 (2022-07-21)

Features

• add kraken2 analysis to workflow (#39) (990c8c9)
• added version.txt and Changelog.md file (#23) (7e37f04)
• filtering for human (#33) (a019ac9)
• read single end data (#28) (b37055b)
• updated README.md (#36) (219b051)

Bug Fixes

• added missing data download for reference genome (#38) (98eba5f)
• changed sizes of plots to fit more samples (#42) (662d4ae)
• fix data preparation test problem (#37) (58cea5a)