ICE0584
Follow
Lists (1)
Stars
Download FASTQ files from SRA or ENA repositories.
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…
ChIP-seq analysis notes from Ming Tang
🔬 Path to a free self-taught education in Bioinformatics!
resources for learning bioinformatics
A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)
Web scraping y análisis de texto sobre un corpus de texto de noticias de la prensa chilena, con nuevos datos obtenidos diariamente, y app actualizada semanalmente
This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length …
genomic feature extract in genomics and bioinformatics
Match up paired end fastq files quickly and efficiently.
Coding the examples from the StatQuest Illustrated Guide to Machine Learning (Python)
Transcript assembly and quantification for RNA-Seq
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Repositorio de apuntes y código del curso Introducción a la bioinformática e investigación reproducible para análisis genéticos del semestre 2016-II
En este documento se realiza un informe dinámico del ejemplo de k-NN para el diagnóstico de cáncer de mama mostrado en el libro "Machine Learning With R" (Lantz, 2015). Para más información ir a [d…
A unified interface to spatial transcriptomics deconvolution tools
bedtools - the swiss army knife for genome arithmetic
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.