fix: Gliner bug in training (#643) #1277
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| name: "Tests" | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - 'release/**' | |
| paths-ignore: | |
| - '**/*.md' # Ignore changes to all .md files | |
| pull_request: | |
| types: | |
| - opened | |
| - synchronize | |
| - reopened | |
| - ready_for_review | |
| branches: | |
| - master | |
| - 'release/**' | |
| paths-ignore: | |
| - '**/*.md' # Ignore changes to all .md files | |
| env: | |
| CACHE_NAME_PREFIX: v1 | |
| DOCKER_BUILD_CONFIG_BRANCH: "master" | |
| DOCKER_BUILD_CONFIG_PATH: ".github/docker-build-config.yml" | |
| DOCKER_EXAMPLES_DIRECTORY: "label_studio_ml/examples" | |
| jobs: | |
| run_pytest: | |
| name: Run pytest | |
| if: needs.calculate_matrix.outputs.matrix-include != '[]' | |
| needs: calculate_matrix | |
| runs-on: ${{ matrix.runs_on || 'ubuntu-latest' }} | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: ${{ fromJson(needs.calculate_matrix.outputs.matrix-include) }} | |
| env: | |
| LOG_DIR: pytest_logs | |
| collect_analytics: false | |
| TEST_WITH_CPU: ${{ matrix.backend_dir_name == 'segment_anything_model' }} | |
| steps: | |
| - uses: hmarr/[email protected] | |
| - name: Extract branch name on direct push to a branch | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/heads/') | |
| run: | | |
| echo "BRANCH_NAME=$(echo ${GITHUB_REF#refs/heads/})" >> $GITHUB_ENV | |
| - name: Extract branch name on 'pull_request' | |
| if: github.event_name == 'pull_request' | |
| run: | | |
| echo "BRANCH_NAME=$(echo ${GITHUB_HEAD_REF})" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: "${{ env.GITHUB_SHA }}" | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - uses: actions/cache@v4 | |
| name: Configure pip cache | |
| id: pip-cache | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ env.CACHE_NAME_PREFIX }}-${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}-${{ hashFiles('**/requirements-test.txt') }} | |
| restore-keys: | | |
| ${{ env.CACHE_NAME_PREFIX }}-${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get clean | |
| sudo apt-get update | |
| sudo apt-get install virtualenv libsasl2-dev python3-dev libldap2-dev libssl-dev | |
| pip install -r tests/requirements-test.txt | |
| pip install -r requirements.txt | |
| pip install -e . | |
| - name: Check pytest version | |
| run: pytest --version | |
| - name: Build the stack | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| TEST_ENV: "true" | |
| run: docker compose -f label_studio_ml/examples/${{ matrix.backend_dir_name }}/docker-compose.yml up -d --build | |
| - name: Wait for stack | |
| timeout-minutes: 20 | |
| run: | | |
| while [ "$(curl -s -o /dev/null -L -w ''%{http_code}'' "http://localhost:9090/health")" != "200" ]; do | |
| echo "=> Waiting for service to become available" && sleep 2s | |
| done | |
| - name: Run general functional tests | |
| env: | |
| ML_BACKEND: ${{ matrix.backend_dir_name }} | |
| run: | | |
| pytest tests/ -vvv --ignore-glob='**/logs/*' --ignore-glob='**/data/*' --cov=. --cov-report=xml:tests/${{ matrix.backend_dir_name }}_coverage.xml | |
| - name: Run per-ml-backend tests | |
| env: | |
| ML_BACKEND: ${{ matrix.backend_dir_name }} | |
| run: | | |
| docker compose -f label_studio_ml/examples/${{ matrix.backend_dir_name }}/docker-compose.yml exec -T ${{ matrix.backend_dir_name }} pytest -vvv --cov --cov-report=xml:/tmp/coverage.xml | |
| - name: Copy per-ml-backend coverage.xml from the container | |
| run: | | |
| docker compose -f label_studio_ml/examples/${{ matrix.backend_dir_name }}/docker-compose.yml cp ${{ matrix.backend_dir_name }}:/tmp/coverage.xml label_studio_ml/examples/${{ matrix.backend_dir_name }}/coverage.xml | |
| - name: Pull the logs | |
| if: always() | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| run: docker compose -f label_studio_ml/examples/${{ matrix.backend_dir_name }}/docker-compose.yml logs | |
| - name: "Upload general coverage to Codecov" | |
| if: ${{ matrix.backend_dir_name == 'the_simplest_backend' }} | |
| uses: codecov/[email protected] | |
| with: | |
| name: codecov-general | |
| files: ./tests/${{ matrix.backend_dir_name }}_coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: false | |
| - name: "Upload ml-backend ${{ matrix.backend_dir_name }} coverage to Codecov" | |
| uses: codecov/[email protected] | |
| with: | |
| name: codecov-${{ matrix.backend_dir_name }} | |
| files: ./label_studio_ml/examples/${{ matrix.backend_dir_name }}/coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: false | |
| calculate_matrix: | |
| name: "Calculate test matrix" | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix-include: ${{ steps.matrix.outputs.matrix-include }} | |
| steps: | |
| - uses: hmarr/[email protected] | |
| - run: npm install js-yaml | |
| - name: Build matrix | |
| id: matrix | |
| uses: actions/github-script@v7 | |
| env: | |
| BASE_REF: "${{ github.event.pull_request.base.sha || github.event.before }}" | |
| HEAD_REF: "${{ github.event.pull_request.head.sha || github.event.after }}" | |
| EVENT_NAME: "${{ github.event_name }}" | |
| with: | |
| script: | | |
| const yaml = require('js-yaml'); | |
| const {owner, repo} = context.repo; | |
| const default_branch = process.env.DOCKER_BUILD_CONFIG_BRANCH; | |
| const docker_build_config_path = process.env.DOCKER_BUILD_CONFIG_PATH; | |
| const docker_examples_directory = process.env.DOCKER_EXAMPLES_DIRECTORY; | |
| const base_ref = process.env.BASE_REF; | |
| const head_ref = process.env.HEAD_REF; | |
| const event_name = process.env.EVENT_NAME; | |
| const docker_build_config_blob = await github.rest.repos.getContent({ | |
| owner: owner, | |
| repo: repo, | |
| ref: default_branch, | |
| path: docker_build_config_path, | |
| }); | |
| const docker_build_config_content = Buffer.from(docker_build_config_blob.data.content, docker_build_config_blob.data.encoding).toString("utf8"); | |
| const docker_build_config = yaml.load(docker_build_config_content); | |
| let backends = []; | |
| if (event_name === 'push') { | |
| const {data: examples} = await github.rest.repos.getContent({ | |
| owner: owner, | |
| repo: repo, | |
| ref: head_ref, | |
| path: docker_examples_directory, | |
| }); | |
| backends = new Set(examples.filter(e => e.type === 'dir').map(e => e.path.split('/')[2])); | |
| } else { | |
| const {data: compare} = await github.rest.repos.compareCommits({ | |
| owner, | |
| repo, | |
| base: base_ref, | |
| head: head_ref, | |
| }); | |
| backends = new Set(compare.files.filter(e => e.filename.startsWith(docker_examples_directory)).map(e => e.filename.split('/')[2])); | |
| } | |
| let matrixInclude = []; | |
| for (const backend of backends) { | |
| const config = docker_build_config.find(e => e.backend_dir_name === backend) | |
| let runs_on = "ubuntu-latest"; | |
| if (config) { | |
| console.log(`Config for ${backend}:`); | |
| console.log(config); | |
| if ((config.bypass ?? []).includes("pytests")) { | |
| console.log(`Skipping pytests for ${backend}`); | |
| continue; | |
| } | |
| runs_on = config.runs_on ?? "ubuntu-latest"; | |
| } else { | |
| console.log(`Could not find config for ${backend}`); | |
| } | |
| matrixInclude.push({"backend_dir_name": backend, "runs_on": runs_on}); | |
| } | |
| console.log(matrixInclude); | |
| core.setOutput("matrix-include", matrixInclude); | |
| dependabot-auto-merge: | |
| name: "Auto Merge dependabot PR" | |
| if: | | |
| always() && | |
| needs.run_pytest.result == 'success' && | |
| github.event_name == 'pull_request' && | |
| github.event.pull_request.user.login == 'dependabot[bot]' && | |
| ( startsWith(github.head_ref, 'dependabot/npm_and_yarn/') || startsWith(github.head_ref, 'dependabot/pip/') ) | |
| runs-on: ubuntu-latest | |
| needs: | |
| - run_pytest | |
| steps: | |
| - name: Enable auto-merge for Dependabot PRs | |
| run: gh pr merge --admin --squash "${PR_URL}" | |
| env: | |
| PR_URL: ${{ github.event.pull_request.html_url }} | |
| GITHUB_TOKEN: ${{ secrets.GIT_PAT }} |