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Hoffmann-Lab

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  1. bashbone bashbone Public

    A bash/biobash library for workflow and pipeline design

    Shell 8 3

  2. TEdetectionEvaluation TEdetectionEvaluation Public

    Tool comparison for detecting differentially expressed individual transposable elements

    R 7 1

  3. muvac muvac Public

    MUVAC implements multiple variant calling options from Exome-Seq/WG-Seq or RNA-Seq data. It offers free GATK best-practices in an optimized, parallelized fashion.

    Shell 5 2

  4. shournal shournal Public

    Forked from tycho-kirchner/shournal

    Log shell-commands and used files. Snapshot executed scripts. Fully automatic.

    C++ 4

  5. rippchen rippchen Public

    Peak calling from *IP-Seq or differential expression- and ontology analysis from RNA-Seq data

    Shell 3 1

  6. STageR STageR Public

    STage of aging estimatoR: Cluster-based epigenetic clockwise classifier predicting the aging stage

    HTML 1 1

Repositories

Showing 10 of 12 repositories
  • shournal Public Forked from tycho-kirchner/shournal

    Log shell-commands and used files. Snapshot executed scripts. Fully automatic.

    Hoffmann-Lab/shournal’s past year of commit activity
    C++ 4 GPL-3.0 10 0 0 Updated Mar 24, 2025
  • muvac Public

    MUVAC implements multiple variant calling options from Exome-Seq/WG-Seq or RNA-Seq data. It offers free GATK best-practices in an optimized, parallelized fashion.

    Hoffmann-Lab/muvac’s past year of commit activity
    Shell 5 GPL-3.0 2 0 0 Updated Mar 17, 2025
  • rippchen Public

    Peak calling from *IP-Seq or differential expression- and ontology analysis from RNA-Seq data

    Hoffmann-Lab/rippchen’s past year of commit activity
    Shell 3 GPL-3.0 1 0 0 Updated Mar 17, 2025
  • bashbone Public

    A bash/biobash library for workflow and pipeline design

    Hoffmann-Lab/bashbone’s past year of commit activity
    Shell 8 GPL-3.0 3 0 0 Updated Mar 17, 2025
  • Principles_of_tissue-specific_regulation_of_transposable_elements_during_aging Public

    Code for the Manuscript "Principles of tissue-specific regulation of transposable elements during aging".

    Hoffmann-Lab/Principles_of_tissue-specific_regulation_of_transposable_elements_during_aging’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Nov 5, 2024
  • Gene_regulation_by_convergent_promoters Public

    Code for the publication "Gene regulation by convergent promoters".

    Hoffmann-Lab/Gene_regulation_by_convergent_promoters’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 30, 2024
  • STageR Public

    STage of aging estimatoR: Cluster-based epigenetic clockwise classifier predicting the aging stage

    Hoffmann-Lab/STageR’s past year of commit activity
    HTML 1 GPL-3.0 1 0 0 Updated Jan 25, 2024
  • PhyloEpiGenomics Public
    Hoffmann-Lab/PhyloEpiGenomics’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Feb 2, 2023
  • hydroxyclock Public

    Elastic net model for age prediction based on DNA hydroxymethylation

    Hoffmann-Lab/hydroxyclock’s past year of commit activity
    R 0 0 0 0 Updated Jun 25, 2022
  • TEdetectionEvaluation Public

    Tool comparison for detecting differentially expressed individual transposable elements

    Hoffmann-Lab/TEdetectionEvaluation’s past year of commit activity
    R 7 1 0 0 Updated Jan 7, 2022
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