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Classification of Retinal Ganglion Cells using neuronal morphology

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201 Commits
@RGCclass
@RGCclass
 
 
@RGCgui
@RGCgui
 
 
@RGCmorph
@RGCmorph
 
 
@SVM
@SVM
 
 
@VAChT
@VAChT
 
 
DATA
DATA
 
 
FIGS
FIGS
 
 
LSM
LSM
 
 
RESULTS
RESULTS
 
 
SAVE
SAVE
 
 
ms
ms
 
 
.gitignore
.gitignore
 
 
README.md
README.md
 
 
WriteToWordFromMatlab.m
WriteToWordFromMatlab.m
 
 
analyseBestBlindClustering.m
analyseBestBlindClustering.m
 
 
analyseExhaustiveFeatureSearch.m
analyseExhaustiveFeatureSearch.m
 
 
analyseExhaustiveFeatureSearchCdh3Hoxd10split.m
analyseExhaustiveFeatureSearchCdh3Hoxd10split.m
 
 
analyseExhaustiveFeatureSearchExcludingSome.m
analyseExhaustiveFeatureSearchExcludingSome.m
 
 
analyseExhaustiveFeatureSearchFeldmeyer.m
analyseExhaustiveFeatureSearchFeldmeyer.m
 
 
analyseExhaustiveFeatureSearchGulyas.m
analyseExhaustiveFeatureSearchGulyas.m
 
 
analyseExhaustiveFeatureSearchHoxd10split.m
analyseExhaustiveFeatureSearchHoxd10split.m
 
 
analyseExhaustiveFeatureSearchSumbul.m
analyseExhaustiveFeatureSearchSumbul.m
 
 
analyseExhaustiveSearchForBestSumbulFeature.m
analyseExhaustiveSearchForBestSumbulFeature.m
 
 
blindClusterSumbolData.m
blindClusterSumbolData.m
 
 
blindClusteringBatch.m
blindClusteringBatch.m
 
 
blindClusteringBatchFeldmeyer.m
blindClusteringBatchFeldmeyer.m
 
 
blindClusteringBatchGulyas.m
blindClusteringBatchGulyas.m
 
 
blindClusteringComparison.m
blindClusteringComparison.m
 
 
blindConfusionMatrix.m
blindConfusionMatrix.m
 
 
checkSumbul5.m
checkSumbul5.m
 
 
chooseFeaturePostMortem.m
chooseFeaturePostMortem.m
 
 
classifySumbul.m
classifySumbul.m
 
 
doBenchmark.m
doBenchmark.m
 
 
doFeatureSelection.m
doFeatureSelection.m
 
 
drawAllNeurons.m
drawAllNeurons.m
 
 
drawAllNeuronsGulyas.m
drawAllNeuronsGulyas.m
 
 
drawAllNeuronsSide.m
drawAllNeuronsSide.m
 
 
educatedRandomGuess.m
educatedRandomGuess.m
 
 
elinkage.m
elinkage.m
 
 
excludeTRHR.m
excludeTRHR.m
 
 
exhaustiveSearchForBestSumbulFeatures.m
exhaustiveSearchForBestSumbulFeatures.m
 
 
featureValueTable.m
featureValueTable.m
 
 
featureValueTableSumbul.m
featureValueTableSumbul.m
 
 
findBestHoxd10Split.m
findBestHoxd10Split.m
 
 
getConfusionMatrixLatex.m
getConfusionMatrixLatex.m
 
 
getConfusionMatrixLatexFeldmeyer.m
getConfusionMatrixLatexFeldmeyer.m
 
 
getConfusionMatrixLatexGulyas.m
getConfusionMatrixLatexGulyas.m
 
 
getConfusionMatrixLatexSumbul.m
getConfusionMatrixLatexSumbul.m
 
 
howManyRandomFeatureVectorsNeeded.m
howManyRandomFeatureVectorsNeeded.m
 
 
loadFeldmeyer.m
loadFeldmeyer.m
 
 
loadGulyas.m
loadGulyas.m
 
 
loadSumbulFeatures.m
loadSumbulFeatures.m
 
 
makeBoxPlotExhaustiveFeatureSearch.m
makeBoxPlotExhaustiveFeatureSearch.m
 
 
makeBoxPlotExhaustiveFeatureSearchSumbul.m
makeBoxPlotExhaustiveFeatureSearchSumbul.m
 
 
makeCSVTable.m
makeCSVTable.m
 
 
makeConfidenceFigure.m
makeConfidenceFigure.m
 
 
makeConfidenceFigureSumbul.m
makeConfidenceFigureSumbul.m
 
 
makeFeatureSpaceFigure.m
makeFeatureSpaceFigure.m
 
 
makeFeatureSpaceFigureSumbul.m
makeFeatureSpaceFigureSumbul.m
 
 
makeFigureWithAllRGC.m
makeFigureWithAllRGC.m
 
 
makeFigureWithAllRGCuserChosen.m
makeFigureWithAllRGCuserChosen.m
 
 
makeLatexTable.m
makeLatexTable.m
 
 
makeLatexTableHeaders.m
makeLatexTableHeaders.m
 
 
makeMeasureIllustration.m
makeMeasureIllustration.m
 
 
makeNeurolucidaFigures.m
makeNeurolucidaFigures.m
 
 
makeSVMcomparison.m
makeSVMcomparison.m
 
 
makeSVMcomparisonSumbul.m
makeSVMcomparisonSumbul.m
 
 
makeSilhouettePlotRealClasses.m
makeSilhouettePlotRealClasses.m
 
 
makeTypeList.m
makeTypeList.m
 
 
makeWordTable.m
makeWordTable.m
 
 
openAllFigs.m
openAllFigs.m
 
 
optimizeNumberOfTrees.m
optimizeNumberOfTrees.m
 
 
optimizeSVMparameters.m
optimizeSVMparameters.m
 
 
plotAllFeatures.m
plotAllFeatures.m
 
 
plotAllFeaturesForSupplementary.m
plotAllFeaturesForSupplementary.m
 
 
plotFeatureMatCorr.m
plotFeatureMatCorr.m
 
 
plotHoxdSplit.m
plotHoxdSplit.m
 
 
printA4.m
printA4.m
 
 
redo.m
redo.m
 
 
runBlind.m
runBlind.m
 
 
runExhaustiveFeatureSearch.m
runExhaustiveFeatureSearch.m
 
 
runExhaustiveFeatureSearchFeldmeyer.m
runExhaustiveFeatureSearchFeldmeyer.m
 
 
runExhaustiveFeatureSearchGulyas.m
runExhaustiveFeatureSearchGulyas.m
 
 
runExhaustiveFeatureSearchSplitCdh3Hoxd10.m
runExhaustiveFeatureSearchSplitCdh3Hoxd10.m
 
 
runExhaustiveFeatureSearchSplitHoxd10.m
runExhaustiveFeatureSearchSplitHoxd10.m
 
 
runExhaustiveFeatureSearchSumbul.m
runExhaustiveFeatureSearchSumbul.m
 
 
runme.m
runme.m
 
 
showAverageNeurons.m
showAverageNeurons.m
 
 
showFeatureCartoon.m
showFeatureCartoon.m
 
 
showFeatureCartoonTogether.m
showFeatureCartoonTogether.m
 
 
showMissclassifiedNeurons.m
showMissclassifiedNeurons.m
 
 
slowBug.m
slowBug.m
 
 
sortingRGCbySize.m
sortingRGCbySize.m
 
 
splitCdh3Hoxd10.m
splitCdh3Hoxd10.m
 
 
splitHoxd10.m
splitHoxd10.m
 
 
sumImage.c
sumImage.c
 
 
sumImage.log
sumImage.log
 
 
sumImage.mexmaci64
sumImage.mexmaci64
 
 
testParamsSVM.m
testParamsSVM.m
 
 
tryToIDunknowns.m
tryToIDunknowns.m
 
 

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RGCmorph

Classification of Retinal Ganglion Cells using neuronal morphology

This repository contains the data and the code relating to the manuscript by Hjorth et al. (2015).

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Classification of Retinal Ganglion Cells using neuronal morphology

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