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Update build failure list #52

Update build failure list

Update build failure list #52

name: Update build failure list
on:
schedule:
- cron: 5 5 * * *
push:
branches:
- master
paths:
- "**build_failure.*.yaml"
jobs:
update-build-failure-page:
name: Update build failure page
if: github.repository == 'bioconda/bioconda-recipes'
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: set path
run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH
- name: Fetch conda install script
run: |
wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{common,install-and-set-up-conda,configure-conda}.sh
- name: Restore cache
id: cache
uses: actions/cache@v3
with:
path: /opt/mambaforge
key: ${{ runner.os }}--master--${{ hashFiles('install-and-set-up-conda.sh', 'common.sh', 'configure-conda.sh') }}
- name: Set up bioconda-utils
if: steps.cache.outputs.cache-hit != 'true'
run: bash install-and-set-up-conda.sh
# This script can be used to reconfigure conda to use the right channel setup.
# This has to be done after the cache is restored, because
# the channel setup is not cached as it resides in the home directory.
# We could use a system-wide (and therefore cached) channel setup,
# but mamba does not support that at the time of implementation
# (it ignores settings made with --system).
- name: Configure conda
run: bash configure-conda.sh
- name: Generate build failure table
run: |
set -e
eval "$(conda shell.bash hook)"
conda activate bioconda
mkdir build-failures
md=build-failures/build-failures.md
echo "# Build failures" > $md
echo "Automatically updated (nightly) list of build failures that currently block builds from the listed recipes. Please help with fixing them!" >> $md
bioconda-utils list-build-failures recipes --output-format markdown --link-prefix https://github.com/bioconda/bioconda-recipes/blob/master >> $md
- name: Upload build failure to wiki
uses: docker://decathlon/wiki-page-creator-action:latest
env:
GH_PAT: ${{secrets.BIOCONDA_BOT_REPO_TOKEN}}
ACTION_MAIL: [email protected]
ACTION_NAME: BiocondaBot
OWNER: bioconda
REPO_NAME: bioconda-recipes
MD_FOLDER: build-failures