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@HaghverdiLab

Haghverdi Lab

We develop mathematical and computational methods facilitating extraction of statistically sound knowledge from high-throughput biological data.

Popular repositories Loading

  1. CCLONE CCLONE Public

    Python 5

  2. Compound-SNE Compound-SNE Public

    Python 3 1

  3. velocity_package velocity_package Public template

    Python 2 2

  4. velocity_notebooks velocity_notebooks Public

    Jupyter Notebook 2 1

  5. CelltypeLabelTransfer CelltypeLabelTransfer Public

    Benchmark of existing cell type lable transfer methods and analysis on how the careful selection of the reference data can improve the predictions.

    Jupyter Notebook 1

  6. cellAnnotation_Benchmark cellAnnotation_Benchmark Public

    Jupyter Notebook

Repositories

Showing 9 of 9 repositories
  • Compound-SNE Public
    HaghverdiLab/Compound-SNE’s past year of commit activity
    Python 3 1 0 0 Updated Sep 28, 2024
  • velocity_package Public template
    HaghverdiLab/velocity_package’s past year of commit activity
    Python 2 AGPL-3.0 2 1 2 Updated Sep 17, 2024
  • Comparing-Three-Variations-of-Diffusion-Maps Public
    HaghverdiLab/Comparing-Three-Variations-of-Diffusion-Maps’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 13, 2024
  • CCLONE_notebooks Public
    HaghverdiLab/CCLONE_notebooks’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Aug 8, 2024
  • CCLONE Public
    HaghverdiLab/CCLONE’s past year of commit activity
    Python 5 0 0 0 Updated Aug 8, 2024
  • ATAC_RNA_ModelScripts Public

    Scripts and analysis of Sid's master thesis, "Information content and cross-modality relationship between scATAC-seq and scRNA-seq in stationary and transitory cell states"

    HaghverdiLab/ATAC_RNA_ModelScripts’s past year of commit activity
    R 0 0 0 0 Updated Nov 17, 2023
  • CelltypeLabelTransfer Public

    Benchmark of existing cell type lable transfer methods and analysis on how the careful selection of the reference data can improve the predictions.

    HaghverdiLab/CelltypeLabelTransfer’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 11, 2023
  • cellAnnotation_Benchmark Public
    HaghverdiLab/cellAnnotation_Benchmark’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 11, 2023
  • velocity_notebooks Public
    HaghverdiLab/velocity_notebooks’s past year of commit activity
    Jupyter Notebook 2 AGPL-3.0 1 1 0 Updated Sep 7, 2022

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