--samtools option is deprecated in UnifyRepresentation

HKU-BAL · Sep 29, 2021 · 457c59d · 457c59d
1 parent bda6ac5
commit 457c59d
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/docs/representation_unification.md b/docs/representation_unification.md
@@ -162,7 +162,6 @@ ${PARALLEL} --joblog ${OUTPUT_DIR}/unify_repre.log -j${THREADS} \
     --bed_fn ${BED_FILE_PATH} \
     --extend_bed ${SPLIT_BED_PATH}/{1} \
     --output_vcf_fn ${VCF_OUTPUT_PATH}/vcf_{1}_{2} \
-    --samtools ${SAMTOOLS} \
     --min_af ${MIN_AF} \
     --chunk_id {2} \
     --chunk_num ${chunk_num} \