Add more details on Apptainer usage to setup/getting started docs (#268) #622
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| name: tests | |
| #Running tests on all branches | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| # Needed for micromamba pickup | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| test: | |
| # Setup the Python that the ROOT binary was built against | |
| runs-on: ${{ matrix.os }} | |
| # On push events run the CI only on main by default, but run on any branch if the commit message contains '[ci all]' | |
| if: >- | |
| github.event_name != 'push' | |
| || (github.event_name == 'push' && github.ref == 'refs/heads/main') | |
| || (github.event_name == 'push' && github.ref != 'refs/heads/main' && contains(github.event.head_commit.message, '[ci all]')) | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| root-version: ["", "6.24", "6.26", "6.28", "6.30"] | |
| python-version: ["3.6", "3.7", "3.8", "3.9", "3.10", "3.11"] | |
| exclude: | |
| - root-version: "6.24" | |
| python-version: "3.10" | |
| - root-version: "6.24" | |
| python-version: "3.11" | |
| - root-version: "6.26" | |
| python-version: "3.6" | |
| - root-version: "6.26" | |
| python-version: "3.7" | |
| - root-version: "6.26" | |
| python-version: "3.11" | |
| - root-version: "6.28" | |
| python-version: "3.6" | |
| - root-version: "6.28" | |
| python-version: "3.7" | |
| - root-version: "6.30" | |
| python-version: "3.6" | |
| - root-version: "6.30" | |
| python-version: "3.7" | |
| include: | |
| - os: macos-latest | |
| root-version: "6.30" | |
| python-version: "3.11" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Micromamba environment | |
| if: ${{ matrix.root-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: ci | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| root=${{ matrix.root-version }} | |
| imagemagick | |
| ghostscript | |
| pip | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - name: Setup Micromamba environment without ROOT | |
| if: ${{ !matrix.root-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: ci | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| imagemagick | |
| ghostscript | |
| pip | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - name: ROOT info | |
| if: ${{ matrix.root-version }} | |
| run: | | |
| root-config --version | |
| root-config --python-version | |
| # Install dependencies | |
| - name: Install python dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade \ | |
| 'pylint' \ | |
| pytest_pylint \ | |
| configparser \ | |
| astroid \ | |
| pyyml \ | |
| papermill \ | |
| nbconvert \ | |
| jupyter \ | |
| pytest \ | |
| pytest-cov | |
| - name: Install hepdata_lib | |
| run: python -m pip install '.[test]' | |
| # Use python -m pytest to add current working dir as src/ dir layout not used | |
| - name: Run pytest | |
| if: ${{ matrix.root-version }} | |
| run: | | |
| python -m pytest tests | |
| - name: Run pytest without ROOT | |
| if: ${{ !matrix.root-version }} | |
| run: | | |
| python -m pytest tests -m 'not needs_root' | |
| - name: Report coverage with Codecov | |
| if: ${{ matrix.root-version }} | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| files: ./coverage.xml | |
| flags: unittests-${{ matrix.python-version }} | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Save notebooks | |
| if: ${{ always() && matrix.root-version }} | |
| run: | | |
| python -m jupyter kernelspec list | |
| python -m jupyter nbconvert --ExecutePreprocessor.timeout=600 --ExecutePreprocessor.allow_errors=True --to html --execute examples/*.ipynb | |
| - name: Upload notebooks | |
| if: ${{ always() && matrix.root-version }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: notebooks-${{ matrix.root-version }}-${{ matrix.python-version }}-${{ matrix.os }} py3-${{ matrix.root-version }}-${{ matrix.python-version }}-${{ matrix.os }} | |
| path: examples/*.html | |
| - name: Run pylint on hepdata_lib | |
| if: ${{ always() && !startsWith(matrix.python-version, '3.6') && !startsWith(matrix.python-version, '3.7') }} | |
| run: | | |
| python -m pylint hepdata_lib/*.py | |
| - name: Run pylint on tests | |
| if: ${{ always() && !startsWith(matrix.python-version, '3.6') && !startsWith(matrix.python-version, '3.7') }} | |
| run: | | |
| python -m pylint tests/*.py |