Fix naming and paths of Advection Miniapp

advection/README.md

@@ -1,6 +1,6 @@
-### README for Running `advection_example.jl`
+### README for Running `advection_miniapp.jl`
 
-This README provides instructions on how to run the `advection_example.jl` script for simulating advection using the Atlas library. The script allows for terminal visualization, which can be enabled as described below.
+This README provides instructions on how to run the `advection_miniapp.jl` script for simulating advection using the Atlas library. The script allows for terminal visualization, which can be enabled as described below.
 
 #### Prerequisites
 
@@ -15,23 +15,23 @@ This README provides instructions on how to run the `advection_example.jl` scrip
      ```
 
 2. **Enabling Visualization** (optional):
-   - The script has a `VISUALIZATION_FLAG` that can be set to enable or disable visualization on the terminal. Ensure that this flag is set to `true` in the `advection_example.jl` script if you wish to enable visualization.
+   - The script has a `VISUALIZATION_FLAG` that can be set to enable or disable visualization on the terminal. Ensure that this flag is set to `true` in the `advection_miniapp.jl` script if you wish to enable visualization.
    - Note: Other parameters such as the number of iterations can be changed in the `# Simulation Parameters` section of the script.
 
 #### Running the Simulation
 
 1. **Running the Script**:
-   - Use the following command to run the `advection_example.jl` script with Julia:
+   - Use the following command to run the `advection_miniapp.jl` script with Julia:
      ```sh
-     julia --color=yes --project=$GRIDTOOLS_JL_PATH/GridTools.jl $GRIDTOOLS_JL_PATH/GridTools.jl/src/examples/advection/advection_example.jl
+     julia --color=yes --project=$GRIDTOOLS_JL_PATH/GridTools.jl $GRIDTOOLS_JL_PATH/GridTools.jl/src/examples/advection/advection_miniapp.jl
      ```
 
 #### Example
 
-Here is an example of how to set the `VISUALIZATION_FLAG` in the `advection_example.jl` script and run the simulation:
+Here is an example of how to set the `VISUALIZATION_FLAG` in the `advection_miniapp.jl` script and run the simulation:
 
 1. **Setting the Visualization Flag**:
-   - Open the `advection_example.jl` script.
+   - Open the `advection_miniapp.jl` script.
    - Set the `VISUALIZATION_FLAG` to `true`:
      ```julia
      const VISUALIZATION_FLAG = true
@@ -42,7 +42,7 @@ Here is an example of how to set the `VISUALIZATION_FLAG` in the `advection_exam
    - Run the script with the following command:
      ```sh
      export GRIDTOOLS_JL_PATH=...
-     julia --color=yes --project=. $GRIDTOOLS_JL_PATH/src/examples/advection/advection_example.jl
+     julia --color=yes --project=. $GRIDTOOLS_JL_PATH/src/examples/advection/advection_miniapp.jl
      ```
 
-By following these steps, you should be able to run the `advection_example.jl` script and visualize the advection simulation results on your terminal.
+By following these steps, you should be able to run the `advection_miniapp.jl` script and visualize the advection simulation results on your terminal.

advection/advection_miniapp.jl

@@ -1,4 +1,4 @@
-# Advection Example
+# Advection Miniapp
 # This script demonstrates an advection simulation using the Atlas library.
 
 using Printf

notes/Benchmarks.jl

@@ -59,7 +59,7 @@ using Profile
 
 # Benchmark for Julia and Python implementations of advection ##############################################################################################################
 
-include("../src/atlas/advection_test.jl")
+include("../advection/advection_miniapp.jl")
 
 println("Starting julia embedded benchmark")
 
@@ -81,7 +81,7 @@ bench_julia_embedded = @benchmark upwind_scheme(
 
 println("Finished Julia embedded benchmark")
 
-include("../src/atlas/advection_test.jl")
+include("../advection/advection_miniapp.jl")
 
 println("Starting julia python benchmark")