JOSS paper draft edits (#34)

* Update paper.md

* Update paper.md

* Test figure format

* Test new table format

* Add citations, table

* Add abstract, more refs

* Add setting up section

* Try and fix formatting

* Minor updates

* Add citations

* Citations

* Update abstract image

* Add additional figure

* Adjust formatting

* Typo

* Table title

* Minor updates

* Update citation

* Minor updates

docs/paper/paper.bib

@@ -1,19 +1,31 @@
-@misc{tyler_sutterley_2024,
-  author       = {Tyler Sutterley},
-  title        = {tsutterley/{pyTMD}: v2.1.8},
-  year         = 2024,
+@misc{pytmd,
+  author       = {Sutterley, T.C. and Alley, K. and Brunt, K. and Howard, S., and Padman, L., and Siegried, M.},
+  title        = {pyTMD: Python-based tidal prediction software},
+  year         = 2017,
   publisher    = {Zenodo},
-  doi          = {10.5281/zenodo.10929240},
-  url          = {https://doi.org/10.5281/zenodo.10929240},
+  doi          = {10.5281/zenodo.5555395},
+  url          = {https://doi.org/10.5281/zenodo.5555395},
 }
 
-@software{The_pandas_development_team_pandas-dev_pandas_Pandas,
-  author = {Development Team, {Pandas}},
-  doi = {10.5281/zenodo.3509134},
-  license = {BSD-3-Clause},
-  title = {pandas-dev/{pandas}: v2.2.3},
-  url = {https://github.com/pandas-dev/pandas},
-  publisher    = {GitHub},
+@software{reback2020pandas,
+    author       = {pandas development team},
+    title        = {pandas-dev/pandas: Pandas},
+    month        = feb,
+    year         = 2020,
+    publisher    = {Zenodo},
+    version      = {latest},
+    doi          = {10.5281/zenodo.3509134},
+    url          = {https://doi.org/10.5281/zenodo.3509134}
+}
+
+@InProceedings{ mckinney-proc-scipy-2010,
+  author    = { {W}es {M}c{K}inney },
+  title     = { {D}ata {S}tructures for {S}tatistical {C}omputing in {P}ython },
+  booktitle = { {P}roceedings of the 9th {P}ython in {S}cience {C}onference },
+  pages     = { 56 - 61 },
+  year      = { 2010 },
+  editor    = { {S}t\'efan van der {W}alt and {J}arrod {M}illman },
+  doi       = { 10.25080/Majora-92bf1922-00a }
 }
 
 @article{Hoyer_xarray_N-D_labeled_2017,
@@ -27,14 +39,44 @@ @article{Hoyer_xarray_N-D_labeled_2017
   year = {2017}
 }
 
-@misc{odc-geo,
-  author       = {Development Team, ODC-geo },
-  title        = {opendatacube/{odc-geo}: v0.4.8},
+@misc{odcgeo,
+  author       = {odc-geo development team},
+  title        = {opendatacube/{odc-geo}},
   license      = {Apache 2.0},
   publisher    = {GitHub},
+  journal      = {GitHub repository},
   year         = 2024,
   url          = {https://github.com/opendatacube/odc-geo},
 }
+ 
+@article{murray2012continental,
+  title={Continental scale mapping of tidal flats across East Asia using the Landsat archive},
+  author={Murray, Nicholas J and Phinn, Stuart R and Clemens, Robert S and Roelfsema, Chris M and Fuller, Richard A},
+  journal={Remote Sensing},
+  volume={4},
+  number={11},
+  pages={3417--3426},
+  year={2012},
+  publisher={Molecular Diversity Preservation International (MDPI)}
+}
+
+@article{sagar2017item,
+  title={Extracting the intertidal extent and topography of the Australian coastline from a 28 year time series of Landsat observations},
+  author={Sagar, S. and Roberts, D. and Bala, B. and Lymburner, L.},
+  journal={Remote Sensing of Environment},
+  volume={195},
+  pages={153--169},
+  year={2017},
+  publisher={Elsevier}
+}
+
+@inproceedings{carrere2022new,
+  title={A new barotropic tide model for global ocean: FES2022},
+  author={Carrere, Loren and Lyard, Florent and Cancet, Mathilde and Allain, Damien and Dabat, Mei-Ling and Fouchet, Ergane and Sahuc, Etienne and Faugere, Yannice and Dibarboure, Gerald and Picot, Nicolas},
+  booktitle={2022 Ocean Surface Topography Science Team Meeting},
+  pages={43},
+  year={2022}
+}
 
 @article{GESLAv3,
   author = {Haigh, Ivan D. and Marcos, Marta and Talke, Stefan A. and Woodworth, Philip L. and Hunter, John R. and Hague, Ben S. and Arns, Arne and Bradshaw, Elizabeth and Thompson, Philip},
@@ -51,6 +93,48 @@ @article{GESLAv3
   year = {2023}
 }
 
+@misc{krause2021dea,
+  title={{Digital Earth Australia} notebooks and tools repository},
+  author={Krause, C. and Dunn, B. and Bishop-Taylor, R. and Adams, C. and Burton, C. and Alger, M. and Chua, S. and Phillips, C. and Newey, V. and Kouzoubov, K. and Leith, A. and Ayers, D. and Hicks, A.},
+  year={2021},
+  publisher={Commonwealth of Australia (Geoscience Australia)},
+  url={https://doi.org/10.26186/145234},
+  howpublished={\url{https://github.com/GeoscienceAustralia/dea-notebooks/}},
+  doi={10.26186/145234}
+}
+
+@misc{deaintertidal,
+  title={{Digital Earth Australia Intertidal}},
+  author={Bishop-Taylor, R. and Phillips, C. and Newey, V. and Sagar, S},
+  year={2024},
+  publisher={Commonwealth of Australia (Geoscience Australia)},
+  url={https://dx.doi.org/10.26186/149403},
+  doi={10.26186/149403}
+}
+
+@article{Fitzpatrick2024,
+  doi = {10.21105/joss.06683},
+  url = {https://doi.org/10.21105/joss.06683},
+  year = {2024},
+  publisher = {The Open Journal},
+  volume = {9},
+  number = {99},
+  pages = {6683},
+  author = {Sharon Fitzpatrick and Daniel Buscombe and Jonathan A. Warrick and Mark A. Lundine and Kilian Vos},
+  title = {CoastSeg: an accessible and extendable hub for satellite-derived-shoreline (SDS) detection and mapping},
+  journal = {Journal of Open Source Software}
+}
+
+@article{eleveld2014estuarine,
+  title={Estuarine suspended particulate matter concentrations from sun-synchronous satellite remote sensing: Tidal and meteorological effects and biases},
+  author={Eleveld, Marieke A and Van der Wal, Daphne and Van Kessel, Thijs},
+  journal={Remote Sensing of Environment},
+  volume={143},
+  pages={204--215},
+  year={2014},
+  publisher={Elsevier}
+}
+
 @article{bishop2021mapping,
   title={Mapping {Australia}'s {Dynamic Coastline} at {Mean Sea Level} Using {Three Decades of Landsat Imagery}},
   author={Bishop-Taylor, R. and Nanson, R. and Sagar, S. and Lymburner, L.},
@@ -85,4 +169,40 @@ @article{sagar2018composites
   publisher={MDPI},
   doi={10.3390/rs10030480},
   url={https://doi.org/10.3390/rs10030480}
+}
+
+@article{vitousek2023future,
+  title={The future of coastal monitoring through satellite remote sensing},
+  author={Vitousek, S. and Buscombe, D. and Vos, K. and Barnard, P. L. and Ritchie, A. C. and Warrick, J. A.},
+  journal={Cambridge Prisms: Coastal Futures},
+  volume={1},
+  pages={e10},
+  year={2023},
+  publisher={Cambridge University Press},
+  doi={10.1017/cft.2022.4},
+  url={https://doi.org/10.1017/cft.2022.4}
+}
+
+@article{turner2021satellite,
+  title={Satellite optical imagery in {Coastal Engineering}},
+  author={Turner, I. L. and Harley, M. D. and Almar, R. and Bergsma, E. W. J.},
+  journal={Coastal Engineering},
+  volume={167},
+  pages={103919},
+  year={2021},
+  publisher={Elsevier},
+  doi={10.1016/j.coastaleng.2021.103919},
+  url={https://doi.org/10.1016/j.coastaleng.2021.103919}
+}
+
+@article{vos2019coastsat,
+  title={{CoastSat}: {A} {Google Earth Engine}-enabled {Python} toolkit to extract shorelines from publicly available satellite imagery},
+  author={Vos, K. and Splinter, K. D. and Harley, M. D. and Simmons, J. A. and Turner, I. L.},
+  journal={Environmental Modelling \& Software},
+  volume={122},
+  pages={104528},
+  year={2019},
+  doi={10.1016/j.envsoft.2019.104528},
+  url={https://doi.org/10.1016/j.envsoft.2019.104528},
+  publisher={Elsevier}
 }