cleaning up dbetabinom #22
Workflow file for this run
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| --- | ||
| name: R Package Validation report 📃 | ||
| on: | ||
| push: | ||
| tags: | ||
| - "v*" | ||
| branches: | ||
| - main | ||
| pull_request: | ||
| types: | ||
| - opened | ||
| - synchronize | ||
| - reopened | ||
| - ready_for_review | ||
| branches: | ||
| - main | ||
| - pre-release | ||
| workflow_dispatch: | ||
| workflow_call: | ||
| inputs: | ||
| install-system-dependencies: | ||
| description: Check for and install system dependencies | ||
| required: false | ||
| default: false | ||
| type: boolean | ||
| enable-staged-dependencies-check: | ||
| description: Enable staged dependencies YAML check | ||
| required: false | ||
| default: true | ||
| type: boolean | ||
| secrets: | ||
| GITHUB_TOKEN: | ||
| description: | | ||
| Github token with read access to repositories, required for staged.dependencies installation | ||
| required: false | ||
| concurrency: | ||
| group: validation-${{ github.event.pull_request.number || github.ref }} | ||
| cancel-in-progress: true | ||
| jobs: | ||
| validation: | ||
| name: Create report 📃 | ||
| runs-on: ubuntu-latest | ||
| if: > | ||
| !contains(github.event.commits[0].message, '[skip validation]') | ||
| && github.event.pull_request.draft == false | ||
| container: | ||
| image: ghcr.io/insightsengineering/rstudio_4.2.1_bioc_3.15:latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| permissions: | ||
| contents: write | ||
| packages: write | ||
| deployments: write | ||
| steps: | ||
| - name: Checkout repo 🛎 | ||
| uses: actions/checkout@v3 | ||
| - name: Run Staged dependencies 🎦 | ||
| uses: insightsengineering/staged-dependencies-action@v1 | ||
| with: | ||
| run-system-dependencies: ${{ inputs.install-system-dependencies }} | ||
| env: | ||
| SD_ENABLE_CHECK: ${{ inputs.enable-staged-dependencies-check }} | ||
| - name: Build report 🏗 | ||
| uses: insightsengineering/thevalidatoR@v1 | ||
| with: | ||
| report_output_prefix: validation_report | ||
| - name: Upload report for review ⬆ | ||
| if: github.ref != 'refs/heads/main' | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: validation_report.pdf | ||
| path: validation_report.pdf | ||
| upload-release-assets: | ||
| name: Upload report to release 🔼 | ||
| needs: validation | ||
| runs-on: ubuntu-latest | ||
| if: startsWith(github.ref, 'refs/tags/v') | ||
| steps: | ||
| - name: Download artifact ⏬ | ||
| uses: actions/download-artifact@v3 | ||
| with: | ||
| name: validation_report.pdf | ||
| - name: Upload report to release 🔼 | ||
| uses: svenstaro/upload-release-action@v2 | ||
| with: | ||
| file: ./validation_report.pdf | ||
| asset_name: validation-report.pdf | ||
| repo_token: ${{ secrets.GITHUB_TOKEN }} | ||
| tag: ${{ github.ref }} | ||
| overwrite: true | ||
