Added RdPack for references

[gowerc]

Closes #243

[github-actions]

Code Coverage Summary

Filename                       Stmts    Miss  Cover    Missing
---------------------------  -------  ------  -------  --------------------------------
R/brier_score.R                  166       0  100.00%
R/DataJoint.R                     76       2  97.37%   264, 270
R/DataLongitudinal.R             119       1  99.16%   245
R/DataSubject.R                   69       1  98.55%   124
R/DataSurvival.R                  74       1  98.65%   146
R/defaults.R                      10       6  40.00%   18-57, 84
R/generics.R                      19       1  94.74%   49
R/JointModel.R                   122       8  93.44%   142-144, 194, 198, 240, 286, 292
R/JointModelSamples.R             54       0  100.00%
R/Link.R                          55       4  92.73%   159-162
R/LinkComponent.R                 47       5  89.36%   100, 118, 132-149
R/LongitudinalGSF.R               64       0  100.00%
R/LongitudinalModel.R             35      12  65.71%   68-83
R/LongitudinalQuantities.R        85       8  90.59%   100-107
R/LongitudinalRandomSlope.R       27       0  100.00%
R/LongitudinalSteinFojo.R         57       8  85.96%   113-135
R/Parameter.R                     14       0  100.00%
R/ParameterList.R                 42       1  97.62%   184
R/Prior.R                        236       8  96.61%   480, 576, 588-606
R/Quantities.R                   105       0  100.00%
R/settings.R                      11      11  0.00%    40-53
R/simulations_gsf.R               41       0  100.00%
R/simulations_os.R                11       5  54.55%   35-39
R/simulations_rs.R                21       0  100.00%
R/simulations_sf.R                38      38  0.00%    17-107
R/simulations.R                  101       1  99.01%   128
R/StanModel.R                     15       0  100.00%
R/StanModule.R                   177       6  96.61%   199-200, 242, 253, 388, 416
R/SurvivalExponential.R           10       0  100.00%
R/SurvivalLoglogistic.R           11       0  100.00%
R/SurvivalModel.R                 19       0  100.00%
R/SurvivalQuantities.R           151       6  96.03%   173-178
R/SurvivalWeibullPH.R             11       0  100.00%
R/utilities.R                    145       1  99.31%   13
R/zzz.R                            2       2  0.00%    3-12
TOTAL                           2240     136  93.93%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: 86a9866

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

  1 files   35 suites   4m 58s ⏱️
107 tests  81 ✅ 26 💤 0 ❌
795 runs  769 ✅ 26 💤 0 ❌

Results for commit 86a9866.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
JointModelSamples	💔	$31.38$	$+3.14$	$0$	$0$	$0$	$0$
LongitudinalQuantiles	💔	$41.17$	$+3.91$	$0$	$0$	$0$	$0$
SurvivalExponential	💔	$27.26$	$+2.69$	$0$	$0$	$0$	$0$
brierScore	💔	$26.52$	$+2.83$	$0$	$0$	$0$	$0$
compile	💔	$13.78$	$+1.43$	$0$	$0$	$0$	$0$
misc_models	💔	$21.20$	$+2.05$	$0$	$0$	$0$	$0$
model_random_slope_2chain	💔	$37.52$	$+2.69$	$0$	$0$	$0$	$0$
stan_functions	💔	$46.42$	$+4.79$	$0$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
JointModelSamples	💔	$31.38$	$+3.14$	smoke_test_for_JointModelSamples
LongitudinalQuantiles	💔	$35.54$	$+3.88$	Test_that_LongitudinalQuantities_works_as_expected
SurvivalExponential	💔	$23.54$	$+2.18$	SurvivalExponential_can_recover_true_parameter_no_covariates_
brierScore	💔	$26.34$	$+2.82$	brierScore_SurvivalQuantities_returns_same_results_as_survreg
compile	💔	$13.78$	$+1.43$	compileStanModel_doesn_t_error_if_the_directory_doesn_t_exist
misc_models	💔	$21.20$	$+2.05$	Longitudinal_Model_doesn_t_print_sampler_rejection_messages
model_random_slope_2chain	💔	$37.52$	$+2.69$	Can_recover_known_distribution_parameters_from_random_slope_model_when_using_multiple_chains
stan_functions	💔	$15.84$	$+1.20$	GSF_Identity_Link_Function_works_as_expected
stan_functions	💔	$15.05$	$+1.73$	GSF_SLD_function_works_as_expected
stan_functions	💔	$15.53$	$+1.86$	Normal_Log_Density_functions_work_as_expected

Results for commit 7b90239

♻️ This comment has been updated with latest results.

[danielinteractive]

nice, thanks Craig