Skip to content

Commit

Permalink
Rename intro vignette (#436)
Browse files Browse the repository at this point in the history
  • Loading branch information
gowerc authored Feb 26, 2025
1 parent 3d7f616 commit ba8acd9
Show file tree
Hide file tree
Showing 3 changed files with 35 additions and 3 deletions.
10 changes: 10 additions & 0 deletions _pkgdown.yml
Original file line number Diff line number Diff line change
Expand Up @@ -194,3 +194,13 @@ reference:
- title: Miscellaneous
contents:
- STAN_BLOCKS

articles:
- title: Articles
navbar: ~
contents:
- quickstart
- '`statistical-specification`'
- '`custom-model`'
- '`extending-jmpost`'

2 changes: 2 additions & 0 deletions inst/WORDLIST
Original file line number Diff line number Diff line change
Expand Up @@ -142,6 +142,8 @@ du
int
pk
LogitNormal
parameterised
Quickstart
csv
saveObject
submodel
Expand Down
26 changes: 23 additions & 3 deletions vignettes/model_fitting.Rmd → vignettes/quickstart.Rmd
Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
---
title: "Model Fitting"
title: "jmpost Quickstart"
package: jmpost
output: rmarkdown::html_vignette
vignette: >
%\VignetteIndexEntry{Model Fitting}
%\VignetteIndexEntry{jmpost Quickstart}
%\VignetteEncoding{UTF-8}
%\VignetteEngine{knitr::rmarkdown}
editor_options:
Expand All @@ -18,7 +18,27 @@ knitr::opts_chunk$set(
library(jmpost)
```

Here we describe the basic steps of joint model fitting with `{jmpost}`.

# IMPORTANT

Please note that this document is currently a work-in-progress and does not
contain complete information for this package yet.


# Introduction

The `jmpost` package is used to fit joint models of time-to-event endpoints with an association term
parameterised from a longitudinal submodel. The package was originally designed for the context of
fitting tumour growth inhibition models to inform overall survival but is not limited to this application.

It is important to note that `jmpost` is just a wrapper on top of the Stan programming language and
leans heavily on the wider Stan ecosystem. For example no model diagnostics are provided by `jmpost` with
users being recommended to use packages like `bayesplot` for this functionality.

This vignette provides a basic outline of how to fit a joint model using `jmpost`. For more detailed
information on the package and its functions please refer to the package documentation.



# Model Specification

Expand Down

0 comments on commit ba8acd9

Please sign in to comment.