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Genentech · Jun 26, 2024 · 58e1e30 · 58e1e30
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Showing 11 changed files with 7 additions and 7 deletions.
diff --git a/design/examples/PRIMEstudy/00- Load.R → design/examples/mCRCpub/00- Load.R b/design/examples/PRIMEstudy/00- Load.R → design/examples/mCRCpub/00- Load.R
diff --git a/design/examples/PRIMEstudy/01- ImportPRIME.R → design/examples/mCRCpub/01- ImportPRIME.R b/design/examples/PRIMEstudy/01- ImportPRIME.R → design/examples/mCRCpub/01- ImportPRIME.R
@@ -18,10 +18,10 @@
 #' UID values
 #' ---------------------------------
 
-kras<-haven::read_sas("./design/examples/PRIMEstudy/data/biomark_pds2019.sas7bdat")
+kras<-haven::read_sas("./design/examples/mCRCpub/data/biomark_pds2019.sas7bdat")
 kras0<-kras |> select("SUBJID", "BMMTR1")
 
-adsl<-haven::read_sas("./design/examples/PRIMEstudy/data/adsl_pds2019.sas7bdat")
+adsl<-haven::read_sas("./design/examples/mCRCpub/data/adsl_pds2019.sas7bdat")
 adsl0<-adsl |>
   select("SUBJID", "ATRT", "DTHDY", "DTH") |>
   mutate(STUDY="1", DTHYR=DTHDY/365.25) |>
@@ -31,7 +31,7 @@ UIDlist<-unique(adsl0$SUBJID)
 #' length(UIDlist)
 #' 514
 
-adtr<-haven::read_sas("./design/examples/PRIMEstudy/data/adls_pds2019.sas7bdat")
+adtr<-haven::read_sas("./design/examples/mCRCpub/data/adls_pds2019.sas7bdat")
 keepinadtr0<-c("SUBJID", "VISITDY", "VISIT", "LSSLD")
 
 adtr0<-adtr |>
@@ -46,7 +46,7 @@ adtr0<-adtr |>
 #' length(unique(adtr0$SUBJID))
 #' 263
 
-saveRDS(adtr0, file="./design/examples/PRIMEstudy/data/PRIMEads.rds")
+saveRDS(adtr0, file="./design/examples/mCRCpub/data/PRIMEads.rds")
 
 
 
diff --git a/design/examples/PRIMEstudy/02- DescPRIME.R → design/examples/mCRCpub/02- DescPRIME.R b/design/examples/PRIMEstudy/02- DescPRIME.R → design/examples/mCRCpub/02- DescPRIME.R
@@ -11,7 +11,7 @@
 
 #' sessionInfo()
 
-ads<-readRDS("./design/examples/PRIMEstudy/data/PRIMEads.rds")
+ads<-readRDS("./design/examples/mCRCpub/data/PRIMEads.rds")
 
 #' ===============================================
 #' Visualize SLD

diff --git a/design/examples/PRIMEstudy/03- jmPRIME.R → design/examples/mCRCpub/03- jmPRIME.R b/design/examples/PRIMEstudy/03- jmPRIME.R → design/examples/mCRCpub/03- jmPRIME.R
@@ -11,7 +11,7 @@
 
 #' sessionInfo()
 
-ads<-readRDS("./design/examples/PRIMEstudy/data/PRIMEads.rds")
+ads<-readRDS("./design/examples/mCRCpub/data/PRIMEads.rds")
 
 #' ===============================================
 #' Model SLD
@@ -41,7 +41,7 @@ tgi.samples<-sampleStanModel(tgi.in, data=tgi.dat,
 tgi.out<-as.CmdStanMCMC(tgi.samples)
 print(tgi.out)
 
-#' saveRDS(tgi.out, file="./design/examples/PRIMEstudy/PRIMEtgiout.rds")
+#' saveRDS(tgi.out, file="./design/examples/mCRCpub/PRIMEtgiout.rds")
 
 #' Problems here:
 #' iPred vs. Obs

diff --git a/design/examples/PRIMEstudy/data/PRIMEads.rds → design/examples/mCRCpub/data/PRIMEads.rds b/design/examples/PRIMEstudy/data/PRIMEads.rds → design/examples/mCRCpub/data/PRIMEads.rds
diff --git a/...les/PRIMEstudy/data/adls_pds2019.sas7bdat → ...amples/mCRCpub/data/adls_pds2019.sas7bdat b/...les/PRIMEstudy/data/adls_pds2019.sas7bdat → ...amples/mCRCpub/data/adls_pds2019.sas7bdat
diff --git a/...les/PRIMEstudy/data/adsl_pds2019.sas7bdat → ...amples/mCRCpub/data/adsl_pds2019.sas7bdat b/...les/PRIMEstudy/data/adsl_pds2019.sas7bdat → ...amples/mCRCpub/data/adsl_pds2019.sas7bdat
diff --git a/.../PRIMEstudy/data/biomark_pds2019.sas7bdat → ...les/mCRCpub/data/biomark_pds2019.sas7bdat b/.../PRIMEstudy/data/biomark_pds2019.sas7bdat → ...les/mCRCpub/data/biomark_pds2019.sas7bdat
diff --git a/...les/PRIMEstudy/trash/expon-ph-benchmark.R → ...amples/mCRCpub/trash/expon-ph-benchmark.R b/...les/PRIMEstudy/trash/expon-ph-benchmark.R → ...amples/mCRCpub/trash/expon-ph-benchmark.R
diff --git a/...mples/PRIMEstudy/trash/expon-ph-outputs.R → ...examples/mCRCpub/trash/expon-ph-outputs.R b/...mples/PRIMEstudy/trash/expon-ph-outputs.R → ...examples/mCRCpub/trash/expon-ph-outputs.R
diff --git a/design/examples/PRIMEstudy/trash/trash.R → design/examples/mCRCpub/trash/trash.R b/design/examples/PRIMEstudy/trash/trash.R → design/examples/mCRCpub/trash/trash.R