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fix: fix $DIAMOND_PATH uninitialised error with --skipAllTraining option #54

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fix: fix $DIAMOND_PATH uninitialised error with --skipAllTraining option #54

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fix: fix `$DIAMOND_PATH` uninitialised error with `--skipAllTraining…
gemygk Jul 19, 2024
e138d77
fix: update the fix, even better suggestion by @swarbred
gemygk Jul 19, 2024
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4 changes: 2 additions & 2 deletions scripts/galba.pl
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Original file line number Diff line number Diff line change
Expand Up @@ -545,7 +545,7 @@
fix_AUGUSTUS_CONFIG_PATH(); # if not writable, set to ~/.augustus
set_PYTHON3_PATH();

if (not ($skipAllTraining)){
if (not ($skipAllTraining && $disable_diamond_filter)){
set_DIAMOND_PATH();
}

Expand Down Expand Up @@ -6190,4 +6190,4 @@ sub filter_by_diamond {
system("$pythonCmdString") == 0
or die("ERROR in file " . __FILE__ ." at line ". __LINE__
. "\nFailed to execute: $pythonCmdString\n");
}
}