-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge branch 'feature/39_feature' into develop
- Loading branch information
Showing
12 changed files
with
293 additions
and
141 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,115 @@ | ||
######################################################################## | ||
########## NERRS Science Transfer project - GTMNERR ############# | ||
######################################################################## | ||
|
||
# Geraldine Klarenberg, PhD | ||
# [email protected] | ||
# 6 Sep 2024 | ||
|
||
# Load packages | ||
library(tidyverse) | ||
|
||
# Script to create file with locations, for mapping | ||
|
||
#### Water Quality #### | ||
# import all WQ data | ||
WQ_df <- readRDS("./03_Data_for_app/WQ_all.Rds") | ||
|
||
WQ_years <- WQ_df %>% # site friendly and station code are the names in common | ||
filter(variable %in% c("StationCode", "site_friendly", | ||
"geometry", | ||
"SampleDate", # changed, from StartDate - but also not necessary for locations | ||
"Latitude", | ||
"Longitude", | ||
"data_source") | ||
) %>% | ||
#select(c(RowID, variable, value)) %>% # not necessary | ||
#distinct(RowID, variable, value) %>% # not necessary | ||
pivot_wider( | ||
names_from = variable, | ||
values_from = value, | ||
values_fill = list(value = NA) | ||
) %>% | ||
mutate( | ||
SampleDate = parse_date_time(SampleDate, c("ymd_HMS", "ymd")), # get a warning about 311 failed to parse, but they did, only as ymd | ||
year = year(SampleDate), | ||
Latitude = as.numeric(Latitude), | ||
Longitude = as.numeric(Longitude) | ||
) %>% | ||
group_by(Latitude, Longitude, site_friendly) %>% | ||
summarize(minYear = min(year(SampleDate)), | ||
maxYear = max(year(SampleDate))) | ||
|
||
# make dataframe for map display and hover data | ||
WQ_data_locations = WQ_df %>% # site friendly and station code are the names in common | ||
filter(variable %in% c("StationCode", "site_friendly", | ||
"geometry", | ||
"SampleDate", # changed, from StartDate - but also not necessary for locations | ||
"Latitude", | ||
"Longitude", | ||
"data_source") | ||
) %>% | ||
#select(c(RowID, variable, value)) %>% # not necessary | ||
#distinct(RowID, variable, value) %>% # not necessary | ||
pivot_wider( | ||
names_from = variable, | ||
values_from = value, | ||
values_fill = list(value = NA) | ||
) %>% | ||
mutate( | ||
#SampleDate = ymd_hms(SampleDate), # get a warning about 311 failed to parse, but they did, only as ymd | ||
Latitude = as.numeric(Latitude), | ||
Longitude = as.numeric(Longitude) | ||
) %>% | ||
select(-SampleDate) %>% | ||
distinct(Latitude, Longitude, geometry, data_source, StationCode, site_friendly) | ||
|
||
WQ_data_locations <- WQ_data_locations %>% | ||
left_join(WQ_years) | ||
|
||
# Save data | ||
saveRDS(WQ_data_locations, "03_Data_for_app/WQ_data_locations.Rds") | ||
|
||
WQ_data_locations <- WQ_data_locations %>% | ||
select(-geometry) | ||
|
||
#### Algae #### | ||
HAB_df <- readRDS("03_Data_for_app/HAB.Rds") | ||
|
||
# Get min/max years of measurements | ||
HAB_years <- HAB_df %>% | ||
mutate(date = dmy(`Sample Date`), | ||
year = year(date)) %>% | ||
group_by(Latitude, Longitude, Site) %>% | ||
summarize(minYear = min(year), | ||
maxYear = max(year)) %>% | ||
rename(site_friendly = Site) | ||
|
||
HAB_data_locations <- HAB_df %>% | ||
distinct(Latitude, Longitude, Site) %>% | ||
rename(site_friendly = Site) %>% | ||
mutate(data_source = "FWC") # or GTMNERR? | ||
|
||
HAB_data_locations <- HAB_data_locations %>% | ||
left_join(HAB_years) | ||
|
||
saveRDS(HAB_data_locations, "03_Data_for_app/HAB_data_locations.Rds") | ||
|
||
|
||
#### Shellfish #### | ||
|
||
|
||
|
||
#### All - main page #### | ||
# Add dataset type to dfs | ||
WQ_data_locations["type"] <- "Water Quality" | ||
HAB_data_locations["type"] <- "Algae" | ||
|
||
|
||
# Merge | ||
all_data_locations <- WQ_data_locations %>% | ||
full_join(HAB_data_locations) | ||
|
||
# Save | ||
saveRDS(all_data_locations, "03_Data_for_app/all_data_locations.Rds") | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.