Merge branch 'feature/10_feature' into develop

05_DASHBOARD/Dockerfile

@@ -6,6 +6,7 @@ ENV BRANCH_NAME=${BRANCH_NAME}
 RUN install2.r rsconnect shiny tidyverse bslib leaflet sf
 WORKDIR /usr/src/dashboard-development
 # Copy the 'app' directory contents into the container
+COPY ./app.R /usr/src/dashboard-development/
 COPY ./03_Data_for_app /usr/src/dashboard-development/03_Data_for_app/
 COPY ./04_Tests /usr/src/dashboard-development/04_Tests/
 COPY ./05_DASHBOARD /usr/src/dashboard-development/05_DASHBOARD/

05_DASHBOARD/Dockerfile-dev

@@ -6,6 +6,7 @@ ENV BRANCH_NAME=${BRANCH_NAME}
 RUN install2.r rsconnect shiny tidyverse bslib leaflet sf
 WORKDIR /usr/src/dashboard-development
 # Copy the 'app' directory contents into the container
+COPY ./app.R /usr/src/dashboard-development/
 COPY ./03_Data_for_app /usr/src/dashboard-development/03_Data_for_app/
 COPY ./04_Tests /usr/src/dashboard-development/04_Tests/
 COPY ./05_DASHBOARD /usr/src/dashboard-development/05_DASHBOARD/

05_DASHBOARD/deploy-dev.R

@@ -9,7 +9,5 @@ rsconnect::setAccountInfo(
 
 # Deploy
 rsconnect::deployApp(
-    appDir = "./05_DASHBOARD",
-    appFiles = "app.R",
     appName = "Dashboard-dev",
     forceUpdate = TRUE)

05_DASHBOARD/deploy.R

@@ -9,6 +9,5 @@ rsconnect::setAccountInfo(
 
 # Deploy
 rsconnect::deployApp(
-
-    appFiles = "app.R",
-    appName = "Dashboard")
+    appName = "Dashboard",
+    forceUpdate = TRUE)

05_DASHBOARD/app.R → app.R

@@ -12,27 +12,73 @@ if(!require(tidyverse)){ install.packages("tidyverse") } ;  library(tidyverse)
 if(!require(bslib)){ install.packages("bslib") } ;  library(bslib)
 if(!require(leaflet)){ install.packages("leaflet") } ;  library(leaflet)
 if(!require(sf)){ install.packages("sf") } ;  library(sf)
+if(!require(fs)){ install.packages("fs") } ;  library(fs)
 
 ### READ IN DATA ---------------------------------------------
 # For some reason I need to specify my whole path to the data here (even though
 # I am working in an Rproject)
 
 # NOTE: .RData restores the object to the name it had when you saved it as .RData
-#load("03_Data_for_app/HAB.RData") 
+#load("03_Data_for_app/HAB.RData")
+
+#### Get app.R file dir and set work dir ---------------------
+# Function to find the directory of a file named app.R
+find_directory_of_file <- function(file_name, start_dir=getwd()) {
+  # Recursively list all files starting from the start_dir
+  app_dir <- fs::dir_ls(start_dir, recurse = TRUE, glob=file_name)
+
+  # Check if any file named app.R is found
+  if (length(app_dir) > 0) {
+    # Assuming you want the directory of the first matching file
+    file_dir <- fs::path_dir(app_dir[1])
+    return(file_dir)
+  } else {
+    return(NULL) # Return NULL if the file is not found
+  }
+}
+
+# find file_name from current working directory
+# before trying from a shallower directory
+file_name <- "*/app.R" # The file you are searching for
+
+try({
+  found_dir <- find_directory_of_file(file_name)
+  # Check if found_dir is NULL or empty, indicating the file was not found
+  if (is.null(found_dir) || length(found_dir) == 0) {
+    # print error
+    print("/app.R not found from current working directory!")
+    print("trying again from shallower directory")
+    # trying again from great grandparent directory of working directory
+    setwd("../../..")
+    found_dir <- find_directory_of_file(file_name)
+    if (is.null(found_dir) || length(found_dir) == 0) {
+      print("app.R likely does not exist in filesystem!")
+    }
+    # Set working directory to parent directory of found dir
+    setwd(fs::path_dir(found_dir[1]))
+    # Print working directory
+    print(paste0("Working dir: ", getwd()))
+  }
+  # Set working directory to parent directory of found dir
+  setwd(found_dir[1])
+  # Print working directory
+  print(paste0("Working dir: ", getwd()))
+}, silent = FALSE) # Setting silent = FALSE will print the error message to the console
+
 
 #### HAB data ------------------------------------------------
-load("~/github/GTMNERR Science Transfer/App_dev/03_Data_for_app/HAB.RData")
+load("./03_Data_for_app/HAB.RData")
 HAB_data_locations <- HAB %>% 
     select(Latitude, Longitude, Site, `Collection Agency`, County) %>% # took out `HAB ID` (otherwise 1172 instead of 17 locations)
     distinct() %>% 
     st_as_sf(coords = c("Longitude", "Latitude"), crs = 4326)
 
 #### GTMNERR shapefile ------------------------------------------------
-GTMNERR <- st_read("~/github/GTMNERR Science Transfer/App_dev/03_Data_for_app/shapefiles_new/GTMNERR.shp")
+GTMNERR <- st_read("./03_Data_for_app/shapefiles_new/GTMNERR.shp")
 GTMNERR <- st_transform(GTMNERR, crs = 4326)
 
 #### county shapefiles ------------------------------------------------
-counties_select <- st_read("~/github/GTMNERR Science Transfer/App_dev/03_Data_for_app/shapefiles_new/counties_GTMNERR.shp")
+counties_select <- st_read("./03_Data_for_app/shapefiles_new/counties_GTMNERR.shp")
 counties_select <- st_transform(counties_select, crs = 4326)