Unable to create Enrichment Map: Internal Server Error Failed: null

[LucoLab]

Hi,

I'm working on ubuntu 18.04, java 11 was freshly installed.
I have cytoscape 3.8 with enrichment map plugin install and open.
I use GSEA 4.0.3 to do en enrichment map but the soft doesn't want to open cytoscape.

I also reproduce the same problem on Mac OS 10.13.6 ....same versions of GSEA, Cytoscape.

My GSEA result folder is downloaded from genepattern (v 20.0.x) where I did an analyse online with GSEA Version: 4.0.3

I use GSEA desktop to do to an enrichment map and inject my GSEA results into cytoscape.

25926    [INFO  ] - successfully connected to cytoscape rest
25934    [INFO  ] - Found enrichment map command
26129    [INFO  ] - Get URL:http://localhost:1234/v1/commands/enrichmentmap/gseabuild?edbdir=%2Fhome%2Fjp%2FDesktop%2FCovid19%2FGSEA%2FPATIENTS%2F237246_CUSTOM%2F237246%2Fedb&pvalue=0.005&qvalue=0.1&overlap=0.5&similaritymetric=OVERLAP&combinedconstant=0.5
26168    [INFO  ] - status:Internal Server Error
26170    [INFO  ] - Unable to create Enrichment Map: Internal Server Error
Failed: null

I return first the problem to enrich map team.

So I will try to use enrichmap directly into cytoscape but I think it could be nice to report this problem also to the gsa-desktop team. But the error message is not very verbose :/

Thanks. have a nice day.

[davideby]

Thanks for the report @LucoLab. We haven't had any other reports like this, but we also don't test on all the Linux variants (I work on Linux Mint every day, so it does get a good amount of attention, though). I'll look into this more closely when we are preparing for our next release.

[davideby]

BTW, sorry for the delay in responding! I'm glad you were able to get it to work by using Cytoscape directly.