Skip to content
Python CI/Planemo

Define Python version(s) #7

Sign in to view logs

Define Python version(s)

Define Python version(s) #7

Workflow file for this run

.github/workflows/planemo.yml at 3a108ac
name: Python CI/Planemo
on: [push, pull_request]
jobs:
lint:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.11]
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache Python packages
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Install dependencies
run: pip install flake8 flake8-import-order planemo Pygments
- name: Check dependencies
run: planemo --version
- name: Lint with planemo & flake8
run: planemo lint
- name: Shed lint with planemo
run: planemo shed_lint --tools --ensure_metadata --urls --report_level warn --fail_level error --recursive .
test:
needs: [ lint ]
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.11]
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache Python packages
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Cache Galaxy
uses: actions/cache@v4
with:
path: ~/.planemo/gx_repo
key: ${{ runner.os }}-gx_repo
restore-keys: |
${{ runner.os }}-gx_repo
- name: Install Planemo
run: pip install Planemo
- name: Initialize conda
run: planemo conda_init
- name: Check Planemo version
run: planemo --version
- name: Check Conda version
run: conda --version
- name: Run tests
run: planemo test
deploy:
needs: [ test ]
if: github.event_name == 'push' && github.ref == 'refs/heads/main'
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.11]
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache Python packages
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Install dependencies
run: pip install flake8 flake8-import-order planemo Pygments
- name: Check dependencies
run: planemo --version
- name: Deploy
run: planemo shed_update --shed_target toolshed --shed_key_from_env ${{ secrets.SHED_KEY }} --force_repository_creation .