NetFlax Tax

A visualisation application allowing the user to view protein structures and filter the predicted NetFlax toxin-antitoxin pairs based on taxonomy, nodes, or accession number.

Output Example

Setting Up

How to run

1. Clone the repository to your local machine:

git clone https://github.com/vedabojar/NetFlax-Tax.git

2. Navigate to the directory containing the program

cd NetFlax-Tax

3. Install dependencies

pip install -r requirements.txt

4. Run the program:

python app.py

Folder structure

|- README.md
|- app.py
|- callbacks.py
|- index.py
|- requirements.txt
|- wsgi.py
├── assets
│   ├──color_scheme.py
│   ├──index.css
│   ├──table.css
│   └──download_button.css
├── data
│   ├──data_prep.py
│   ├──rename_domains.py
│   ├──netflax_dataset.xlsx
│   ├──netflax_domain_search.csv
│   ├──domains.txt
│   └──domain_annotation_map.txt
├── functions
│   ├──a1_protein_coords.py
│   ├──a2_protein_coords.py
│   ├──a3_create_logos.py
│   ├──b1_table.py
│   ├──b2_sunburst_fig.py
│   └──b3_download_dataset.py
├── pages
│   ├──home.py
│   └──navigation.py
├── images
│   ├──app_logo.png
│   └──favicon.ico
└── .gitignore