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@mpsonntag mpsonntag released this 23 Jan 16:14
· 465 commits to master since this release
v1.4.4
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Introduction of inline style sheet

The XMLWriter can now be used to save an XML odML document with an inline XSL stylesheet for rendered viewing via a web browser.
The document can be saved with the current default G-Node odML document style or with a custom style. When a document containing such a stylesheet is loaded, the style is lost and needs to be provided again as described above. See issue #331 for details.

Export leaf feature

Subsets of odML documents can now be exported using the introduced export_leaf features for Section and Property.
When invoked on a Section or a Property, the method will return all direct ancestor Sections including all their direct Properties up to the root of the document and return a new, cloned document containing only this particular direct branch. See issue #340 for details.

Major pyyaml dependency fix

Since issue #291 the odml package had its pyyaml dependency fixed to version 4.2b4.
This release fixes the original problem with the pyyaml distribution and removes the fix to pyyaml version 4.2b4.
See issue #343 and pull request #344 for details.

odML package structure changes to reduce import cycles

The package structure was changed to reduce the number of import cycles and make various parser classes more easily available via the __init__ files. See issues #317 and #333 for details.

The changes to the package structure should not affect any of the main parsers and how they were previously imported nor affect any of the command line scripts provided with this package.

The following changes have been introduced to the package structure:

  • a new subdirectory odml.tools.converters is added.
  • format_converter and version_converter are moved into this directory.
  • since odml-ui depends on the version_converter, a dummy file is left at its original location. It imports the VersionConverter class from its new location and prints a deprecation warning.
  • the dict RDFConversionFormats from file tools.utils has been moved to RDF_CONVERSION_FORMATS in file tools.parser_utils and all usages have been switched to the new dict.
  • the dict ConversionFormats from file tools.utils has been moved to the only file its using it, tools.converters.format_converter.
  • the now unused file tools.utils has been removed.
  • a new subdirectory odml.rdf was added and the files fuzzy_finder and query_creator were moved into this directory. Both files provide convenience and additional functions for odML specific RDF and are fairly independent from the rest of the library. Conceptually they are best kept separate from other convenience tools and parsers.

Minor changes, updates and fixes

  • The section_subclasses.yaml file is moved from the doc folder to the new odml/resources folder. This allows usage of the file with all install options. See issue #212 for details.
  • The RDF subclasses now also support DataCite Section types.
  • The rdf_converter now features a new load_rdf_subclasses function, that either provides the content of the resources/subclasses.yml file or, if it cannot be accessed, deals with it without breaking the RDFWriter.
  • Fixes calling the deprecated odml.Property.value attribute in the rdf_converter.
  • The RDFWriter will now call every odml documents finalize method to ensure that all links and includes are resolved before exporting to RDF.
  • The OWL odml ontology file is moved from doc/root-ontology.ttl to odml/resources/odml-ontology.ttl and included in Manifest.in.
  • The RDF namespace is changed from https://g-node.org/projects/odml-rdf# to https://g-node.org/odml-rdf#. This step is taken since the odml-rdf ontology OWL file will be available under this URL. This change includes changes in all code and documentation occurrences in the project.
  • Typos and minor inconsistencies where fixed in the odml - RDF subclasses mapping file resources/section_subclasses.yaml.
  • The OWL odml ontology file resources/odml-ontology.ttl has been restructured:
    • all available subclasses where moved to their own file section.
    • all subclasses that are created via the resources/section_subclasses.yaml file have been added to the ontology file as well.
  • Value errors concerning date, time and datetime now contain a message providing the required format. See issue #341 for details.
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