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59 Open 29 Closed
59 Open 29 Closed
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Issues list

SEACR_showing Error
#100 opened Jun 18, 2024 by dhurjhotisaha
Error in SEACR_1.3.sh running
#98 opened Jan 24, 2024 by dhurjhotisaha
1
inconsistent results with SEACR server
#97 opened Sep 5, 2023 by Rfriedmancolumbia
SEACR Control (IgG) data bedgraph file
#96 opened Aug 1, 2023 by DineshRavindraRaju
Failed to run with control IgG
#95 opened May 31, 2023 by SergioRodLla
signal to noise ratio
#94 opened May 16, 2023 by min0609
SEACR without control – what is the difference between relaxed and stringent mode?
#93 opened Jan 19, 2023 by teemuronkko
Improbably high peak call counts with low IgG read counts -- any way around this?
#92 opened Jan 11, 2023 by SolKatzman
Request: more information in SEACR log output
#91 opened Jan 11, 2023 by SolKatzman
big replicates discrepancy for peaking calling when using negative control
#89 opened Aug 8, 2022 by icanwinwyz
2
Different SEACR peak calling results between IgG and 2ndAbOnly (negative controls)
#88 opened Jul 29, 2022 by jqiu1
1
SEACR missing lots of obvious peaks
#87 opened Jun 27, 2022 by Lillianwu0314
4
SEACR run failed for control mode
#86 opened Jun 3, 2022 by sfpacman
1
Issue Visualizing Control Data
#83 opened Apr 13, 2022 by RomeroMatt
If you call the script from outside the script's directory, the Rscript cannot find the temporary files created by the shell script
#82 opened Mar 24, 2022 by somethingp
1
error on mac os X 12.2.1
#79 opened Mar 6, 2022 by njmuwangxin
4
Possible bug in peak calling_influenced by sequencing depth
#76 opened Jan 6, 2022 by zuzerdhoondia
2
Zero bytes output bed file
#75 opened Dec 6, 2021 by mkim0327
1
Running a range of thresholds vs finding quantiles of all peaks
#74 opened Nov 25, 2021 by benayang
1
*.auc.threshold.merge.bed not created
#72 opened Nov 19, 2021 by MariaRig
3
Unsure of numerical threshold
#70 opened Oct 5, 2021 by hsriniva11
2
line 102: s?9d?o???d??1.auc.bed: Invalid argument
#69 opened Aug 25, 2021 by madurham
1
boardpeaks calling
#67 opened Aug 10, 2021 by 809825706
1
Just 300 reads difference between IgG control files causing 1.5 lakh peak difference
#65 opened Jun 29, 2021 by RanjanaJambu9
2
Error (Empirical false discovery rate...)
#61 opened Jun 11, 2021 by kesozm
1
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