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Merge pull request #130 from FlyBase/release_2022-01-24
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Release 2022-01-24
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@Clare72
Clare72 authored Jan 24, 2022
2 parents cc544d0 + ff182d3 commit e365ba5
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11 changes: 3 additions & 8 deletions dpo-base.json
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},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#date",
"val": "10:12:2021 15:12"
"val": "24:01:2022 12:24"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
"val": "FlyBase miscellaneous CV"
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2021-12-10"
"val": "2022-01-24"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/dpo/releases/2021-12-10/dpo-base.json",
"version": "http://purl.obolibrary.org/obo/dpo/releases/2022-01-24/dpo-base.json",
"xrefs": []
},
"nodes": [
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"lbl": "SMILES",
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/fbcv#has_role",
"lbl": "has role",
"type": "PROPERTY"
},
{
"id": "http://www.geneontology.org/formats/oboInOwl#SubsetProperty",
"lbl": "subset_property",
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10 changes: 3 additions & 7 deletions dpo-base.obo
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@@ -1,6 +1,6 @@
format-version: 1.2
data-version: dpo/releases/2021-12-10/dpo-base.owl
date: 10:12:2021 15:12
data-version: dpo/releases/2022-01-24/dpo-base.owl
date: 24:01:2022 12:24
subsetdef: abnormal_slim "Abnormal/normal slim"
subsetdef: absent_slim "Absent/present slim"
subsetdef: attribute_slim "Attribute slim"
Expand Down Expand Up @@ -40,7 +40,7 @@ property_value: http://purl.org/dc/elements/1.1/title "Drosophila Phenotype Onto
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ xsd:string
property_value: IAO:0000700 FBcv:0000347
property_value: owl:versionInfo "2021-12-10" xsd:string
property_value: owl:versionInfo "2022-01-24" xsd:string

[Term]
id: FBcv:0000002
Expand Down Expand Up @@ -2027,7 +2027,3 @@ domain: CARO:0000012
range: FBdv:00005259
is_functional: true

[Typedef]
id: has_role
name: has role

45 changes: 18 additions & 27 deletions dpo-base.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/dpo/dpo-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2021-12-10/dpo-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2022-01-24/dpo-base.owl"/>
<ns:attributionURL rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://dx.doi.org/10.1186/2041-1480-4-30</ns:attributionURL>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000347"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0002-1373-1705</dc:creator>
Expand All @@ -25,9 +25,9 @@
<dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Drosophila Phenotype Ontology (DPO)</dc:title>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:license rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://creativecommons.org/licenses/by/3.0/</terms:license>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10:12:2021 15:12</oboInOwl:date>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">24:01:2022 12:24</oboInOwl:date>
<oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase miscellaneous CV</oboInOwl:default-namespace>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-12-10</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-01-24</owl:versionInfo>
</owl:Ontology>


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<!-- http://purl.obolibrary.org/obo/fbcv#has_role -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbcv#has_role">
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_role</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has role</rdfs:label>
</owl:ObjectProperty>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in response to heat (GO:0009408). &apos;response to heat&apos; is defined as: &apos;Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:lr</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:lr</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in phototaxis (GO:0042331). &apos;phototaxis&apos; is defined as: &apos;The directed movement of a motile cell or organism in response to light.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:jl</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ISBN:0192800981</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0192800981</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in cytokinesis (GO:0000910). &apos;cytokinesis&apos; is defined as: &apos;The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in immune response (GO:0006955). &apos;immune response&apos; is defined as: &apos;Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:add</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GO_REF:0000022</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO_REF:0000022</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in cell adhesion (GO:0007155). &apos;cell adhesion&apos; is defined as: &apos;The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:hb</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:pf</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:pf</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in cell cycle (GO:0007049). &apos;cell cycle&apos; is defined as: &apos;The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:go_curators</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in response to cold (GO:0009409). &apos;response to cold&apos; is defined as: &apos;Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:lr</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:lr</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -5726,7 +5717,7 @@
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in sleep (GO:0030431). &apos;sleep&apos; is defined as: &apos;Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ISBN:0192800981</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0192800981</oboInOwl:hasDbXref>
</owl:Axiom>


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<oboInOwl:hasDbXref>GOC:cjm</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:dph</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:ems</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:pf</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:pf</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>Wikipedia:Cell_migration</oboInOwl:hasDbXref>
</owl:Axiom>

Expand Down Expand Up @@ -10789,7 +10780,7 @@
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is an increase in the rate of phototaxis (GO:0042331). &apos;phototaxis&apos; is defined as: &apos;The directed movement of a motile cell or organism in response to light.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:CP</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:jl</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ISBN:0192800981</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0192800981</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is a decrease in the rate of phototaxis (GO:0042331). &apos;phototaxis&apos; is defined as: &apos;The directed movement of a motile cell or organism in response to light.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:CP</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:jl</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ISBN:0192800981</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0192800981</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -10873,7 +10864,7 @@
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is an increase in the rate of cell adhesion (GO:0007155). &apos;cell adhesion&apos; is defined as: &apos;The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:CP</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:hb</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:pf</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:pf</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -10915,7 +10906,7 @@
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is a decrease in the rate of cell adhesion (GO:0007155). &apos;cell adhesion&apos; is defined as: &apos;The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:CP</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:hb</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:pf</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:pf</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -10956,7 +10947,7 @@
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is an increase in the total amount or frequency of sleep (GO:0030431) over a given time interval, compared to wild-type. &apos;sleep&apos; is defined as: &apos;Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:CP</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ISBN:0192800981</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0192800981</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is a decrease in the total amount or frequency of sleep (GO:0030431) over a given time interval, compared to wild-type. &apos;sleep&apos; is defined as: &apos;Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:CP</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ISBN:0192800981</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0192800981</oboInOwl:hasDbXref>
</owl:Axiom>


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