Merge pull request #140 from FlyBase/release_2022-06-09

Release 2022-06-09
FlyBase · Jun 9, 2022 · e1a766e · e1a766e
2 parents 283beed + bc408f8
commit e1a766e
Show file tree

Hide file tree

Showing 59 changed files with 354,356 additions and 13,986 deletions.
diff --git a/dpo-base.json b/dpo-base.json
@@ -1211,19 +1211,19 @@
           },
           {
             "pred": "http://www.geneontology.org/formats/oboInOwl#date",
-            "val": "13:04:2022 14:08"
+            "val": "09:06:2022 14:19"
           },
           {
             "pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
             "val": "FlyBase miscellaneous CV"
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2022-04-13"
+            "val": "2022-06-09"
           }
         ],
         "subsets": [],
-        "version": "http://purl.obolibrary.org/obo/dpo/releases/2022-04-13/dpo-base.json",
+        "version": "http://purl.obolibrary.org/obo/dpo/releases/2022-06-09/dpo-base.json",
         "xrefs": []
       },
       "nodes": [
@@ -4092,7 +4092,7 @@
               }
             ],
             "definition": {
-              "val": "Phenotype that is an increase in size of a tissue or organ due to increased numbers of cells, where the affected tissue or organ maintains its normal form.",
+              "val": "Phenotype that is an increase in the number of cells in a tissue or organ, usually associated with an increase in size, where the affected tissue or organ maintains its normal form.",
               "xrefs": [
                 "ISBN:9780198506737"
               ]
@@ -6533,10 +6533,10 @@
               }
             ],
             "comments": [
-              "This term should only be used to report defects specifically in oviposition, as opposed to an overall loss of fertility. If a difference in \"oviposition rate\" is measured by authors as a proxy for sterility/fertility, it would be better to use the terms \"sterile\", \"semi-sterile\", or \"semi-fertile\", as appropriate."
+              "This term should only be used to report defects specifically in oviposition, as opposed to an overall loss of fertility. It is not possible to observe an oviposition abnormality if eggs are not being produced. If a difference in \"oviposition rate\" is measured by authors as a proxy for sterility/fertility, it would be better to use the terms \"sterile\", \"semi-sterile\", or \"semi-fertile\", as appropriate."
             ],
             "definition": {
-              "val": "Phenotype that is any abnormality in oviposition (GO:0007620). 'oviposition' is defined as: 'The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.'.",
+              "val": "Phenotype that is any abnormality in oviposition (GO:0018991) despite production of eggs. 'oviposition' is defined as: 'The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.'.",
               "xrefs": [
                 "FBC:TEMJ",
                 "GOC:ems"

diff --git a/dpo-base.obo b/dpo-base.obo
@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: dpo/releases/2022-04-13/dpo-base.owl
-date: 13:04:2022 14:08
+data-version: dpo/releases/2022-06-09/dpo-base.owl
+date: 09:06:2022 14:19
 subsetdef: abnormal_slim "Abnormal/normal slim"
 subsetdef: absent_slim "Absent/present slim"
 subsetdef: attribute_slim "Attribute slim"
@@ -40,7 +40,7 @@ property_value: http://purl.org/dc/elements/1.1/title "Drosophila Phenotype Onto
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
 property_value: IAO:0000700 FBcv:0000347
-property_value: owl:versionInfo "2022-04-13" xsd:string
+property_value: owl:versionInfo "2022-06-09" xsd:string
 
 [Term]
 id: FBcv:0000002
@@ -937,7 +937,7 @@ is_a: FBcv:0000450 ! abnormal developmental rate
 id: FBcv:0000444
 name: hyperplasia
 namespace: phenotypic_class
-def: "Phenotype that is an increase in size of a tissue or organ due to increased numbers of cells, where the affected tissue or organ maintains its normal form." [ISBN:9780198506737]
+def: "Phenotype that is an increase in the number of cells in a tissue or organ, usually associated with an increase in size, where the affected tissue or organ maintains its normal form." [ISBN:9780198506737]
 synonym: "hyperplastic" EXACT []
 is_a: FBcv:0000362 ! increased cell number
 
@@ -1738,8 +1738,8 @@ intersection_of: RO:0002351 CARO:0000012 {all_only="true"}
 id: FBcv:0006004
 name: abnormal oviposition
 namespace: phenotypic_class
-def: "Phenotype that is any abnormality in oviposition (GO:0007620). 'oviposition' is defined as: 'The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.'." [FBC:TEMJ, GOC:ems]
-comment: This term should only be used to report defects specifically in oviposition, as opposed to an overall loss of fertility. If a difference in "oviposition rate" is measured by authors as a proxy for sterility/fertility, it would be better to use the terms "sterile", "semi-sterile", or "semi-fertile", as appropriate.
+def: "Phenotype that is any abnormality in oviposition (GO:0018991) despite production of eggs. 'oviposition' is defined as: 'The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.'." [FBC:TEMJ, GOC:ems]
+comment: This term should only be used to report defects specifically in oviposition, as opposed to an overall loss of fertility. It is not possible to observe an oviposition abnormality if eggs are not being produced. If a difference in "oviposition rate" is measured by authors as a proxy for sterility/fertility, it would be better to use the terms "sterile", "semi-sterile", or "semi-fertile", as appropriate.
 synonym: "oviposition defective" EXACT []
 is_a: FBcv:0001347 ! phenotype