Merge pull request #160 from FlyBase/release_2022-12-02

Release 2022-12-02
FlyBase · Dec 2, 2022 · 86dd350 · 86dd350
2 parents ab61e21 + 3167f28
commit 86dd350
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Showing 48 changed files with 97,908 additions and 56,172 deletions.
diff --git a/dpo-base.json b/dpo-base.json
@@ -1664,18 +1664,18 @@
           },
           {
             "pred": "http://www.geneontology.org/formats/oboInOwl#date",
-            "val": "20:10:2022 11:02"
+            "val": "02:12:2022 09:35"
           },
           {
             "pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
             "val": "FlyBase miscellaneous CV"
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2022-10-20"
+            "val": "2022-12-02"
           }
         ],
-        "version": "http://purl.obolibrary.org/obo/dpo/releases/2022-10-20/dpo-base.json"
+        "version": "http://purl.obolibrary.org/obo/dpo/releases/2022-12-02/dpo-base.json"
       },
       "nodes": [
         {

diff --git a/dpo-base.obo b/dpo-base.obo
@@ -1,6 +1,6 @@
 format-version: 1.2
-data-version: dpo/releases/2022-10-20/dpo-base.owl
-date: 20:10:2022 11:02
+data-version: dpo/releases/2022-12-02/dpo-base.owl
+date: 02:12:2022 09:35
 subsetdef: abnormal_slim "Abnormal/normal slim"
 subsetdef: absent_slim "Absent/present slim"
 subsetdef: attribute_slim "Attribute slim"
@@ -40,7 +40,7 @@ property_value: http://purl.org/dc/elements/1.1/title "Drosophila Phenotype Onto
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
 property_value: IAO:0000700 FBcv:0000347
-property_value: owl:versionInfo "2022-10-20" xsd:string
+property_value: owl:versionInfo "2022-12-02" xsd:string
 
 [Term]
 id: FBcv:0000002

diff --git a/dpo-base.owl b/dpo-base.owl
@@ -14,7 +14,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/dpo/dpo-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2022-10-20/dpo-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2022-12-02/dpo-base.owl"/>
         <ns:attributionURL rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://dx.doi.org/10.1186/2041-1480-4-30</ns:attributionURL>
         <obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000347"/>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0002-1373-1705</dc:creator>
@@ -25,9 +25,9 @@
         <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Drosophila Phenotype Ontology (DPO)</dc:title>
         <dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
         <terms:license rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://creativecommons.org/licenses/by/4.0/</terms:license>
-        <oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">20:10:2022 11:02</oboInOwl:date>
+        <oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">02:12:2022 09:35</oboInOwl:date>
         <oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase miscellaneous CV</oboInOwl:default-namespace>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-20</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-12-02</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -2405,7 +2405,7 @@
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000384"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in aging (GO:0007568). &apos;aging&apos; is defined as: &apos;A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).&apos;</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:PO_curators</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>GOC:PO_curators</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -3486,7 +3486,7 @@
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in response to heat (GO:0009408). &apos;response to heat&apos; is defined as: &apos;Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.&apos;</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>GOC:lr</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:lr</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -4426,7 +4426,7 @@
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in cytokinesis (GO:0000910). &apos;cytokinesis&apos; is defined as: &apos;The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.&apos;</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -5232,7 +5232,7 @@
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in cell cycle (GO:0007049). &apos;cell cycle&apos; is defined as: &apos;The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.&apos;</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>GOC:go_curators</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -5529,7 +5529,7 @@
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in response to cold (GO:0009409). &apos;response to cold&apos; is defined as: &apos;Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.&apos;</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>GOC:lr</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:lr</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -5773,7 +5773,7 @@
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in entry into diapause (GO:0055115). &apos;entry into diapause&apos; is defined as: &apos;The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.&apos;</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:ds</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>GOC:ds</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>GOC:jid</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>GOC:mah</oboInOwl:hasDbXref>
     </owl:Axiom>
@@ -5817,7 +5817,7 @@
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in entry into reproductive diapause (GO:0055116). &apos;entry into reproductive diapause&apos; is defined as: &apos;The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.&apos;</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:ds</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>GOC:ds</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>GOC:jid</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>GOC:mah</oboInOwl:hasDbXref>
     </owl:Axiom>
@@ -10612,7 +10612,7 @@
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBcv_0007502"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in medium-term memory (GO:0072375). &apos;medium-term memory&apos; is defined as: &apos;The memory process that deals with the storage, retrieval and modification of information received at a time ago that is intermediate between that of short and long term memory (30min - 7hrs in Drosophila melanogaster).&apos;</owl:annotatedTarget>
-        <oboInOwl:hasDbXref>GOC:sart</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:sart</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>PMID:14659098</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>PMID:7923375</oboInOwl:hasDbXref>
     </owl:Axiom>
@@ -11576,7 +11576,7 @@
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is an increase in the efficacy of medium-term memory (GO:0072375) relative to controls. &apos;medium-term memory&apos; is defined as: &apos;The memory process that deals with the storage, retrieval and modification of information received at a time ago that is intermediate between that of short and long term memory (30min - 7hrs in Drosophila melanogaster).&apos;</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:CP</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>GOC:sart</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:sart</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>PMID:14659098</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>PMID:7923375</oboInOwl:hasDbXref>
     </owl:Axiom>
@@ -11620,7 +11620,7 @@
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is a decrease in the efficacy of medium-term memory (GO:0072375) relative to controls. &apos;medium-term memory&apos; is defined as: &apos;The memory process that deals with the storage, retrieval and modification of information received at a time ago that is intermediate between that of short and long term memory (30min - 7hrs in Drosophila melanogaster).&apos;</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:CP</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>GOC:sart</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:sart</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>PMID:14659098</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>PMID:7923375</oboInOwl:hasDbXref>
     </owl:Axiom>