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Merge pull request #137 from FlyBase/release_2022-04-13
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Release 2022-04-13
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@Clare72
Clare72 authored Apr 13, 2022
2 parents 1247891 + 766169a commit 2dfdc23
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6 changes: 3 additions & 3 deletions dpo-base.json
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},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#date",
"val": "24:02:2022 12:53"
"val": "13:04:2022 14:08"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
"val": "FlyBase miscellaneous CV"
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2022-02-24"
"val": "2022-04-13"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/dpo/releases/2022-02-24/dpo-base.json",
"version": "http://purl.obolibrary.org/obo/dpo/releases/2022-04-13/dpo-base.json",
"xrefs": []
},
"nodes": [
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6 changes: 3 additions & 3 deletions dpo-base.obo
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@@ -1,6 +1,6 @@
format-version: 1.2
data-version: dpo/releases/2022-02-24/dpo-base.owl
date: 24:02:2022 12:53
data-version: dpo/releases/2022-04-13/dpo-base.owl
date: 13:04:2022 14:08
subsetdef: abnormal_slim "Abnormal/normal slim"
subsetdef: absent_slim "Absent/present slim"
subsetdef: attribute_slim "Attribute slim"
Expand Down Expand Up @@ -40,7 +40,7 @@ property_value: http://purl.org/dc/elements/1.1/title "Drosophila Phenotype Onto
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string
property_value: IAO:0000700 FBcv:0000347
property_value: owl:versionInfo "2022-02-24" xsd:string
property_value: owl:versionInfo "2022-04-13" xsd:string

[Term]
id: FBcv:0000002
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16 changes: 8 additions & 8 deletions dpo-base.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/dpo/dpo-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2022-02-24/dpo-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2022-04-13/dpo-base.owl"/>
<ns:attributionURL rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://dx.doi.org/10.1186/2041-1480-4-30</ns:attributionURL>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000347"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0002-1373-1705</dc:creator>
Expand All @@ -25,9 +25,9 @@
<dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Drosophila Phenotype Ontology (DPO)</dc:title>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:license rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://creativecommons.org/licenses/by/4.0/</terms:license>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">24:02:2022 12:53</oboInOwl:date>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">13:04:2022 14:08</oboInOwl:date>
<oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase miscellaneous CV</oboInOwl:default-namespace>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-02-24</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-04-13</owl:versionInfo>
</owl:Ontology>


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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in response to heat (GO:0009408). &apos;response to heat&apos; is defined as: &apos;Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:lr</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:lr</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in cytokinesis (GO:0000910). &apos;cytokinesis&apos; is defined as: &apos;The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in immune response (GO:0006955). &apos;immune response&apos; is defined as: &apos;Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:add</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GO_REF:0000022</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO_REF:0000022</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in cell cycle (GO:0007049). &apos;cell cycle&apos; is defined as: &apos;The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:go_curators</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
</owl:Axiom>


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<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phenotype that is any abnormality in response to cold (GO:0009409). &apos;response to cold&apos; is defined as: &apos;Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.&apos;</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:lr</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:lr</oboInOwl:hasDbXref>
</owl:Axiom>


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94 changes: 48 additions & 46 deletions dpo-full.json
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Expand Up @@ -13262,11 +13262,6 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/FBcv_0000721"
},
{
"obj": "http://purl.obolibrary.org/obo/FBcv_0000400",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/FBcv_0006000"
},
{
"obj": "http://purl.obolibrary.org/obo/FBcv_0000403",
"pred": "is_a",
Expand Down Expand Up @@ -13577,6 +13572,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/FBcv_0000401"
},
{
"obj": "http://purl.obolibrary.org/obo/FBcv_0000721",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/FBcv_0006000"
},
{
"obj": "http://purl.obolibrary.org/obo/FBcv_0001347",
"pred": "is_a",
Expand Down Expand Up @@ -22682,6 +22682,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0007619"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0007617",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0007620"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0007617",
"pred": "is_a",
Expand Down Expand Up @@ -30565,7 +30570,7 @@
{
"obj": "http://purl.obolibrary.org/obo/GO_0032501",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0007632"
"sub": "http://purl.obolibrary.org/obo/GO_0007610"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0032501",
Expand All @@ -30577,11 +30582,6 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0030431"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0032501",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0030534"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0032501",
"pred": "is_a",
Expand All @@ -30592,11 +30592,6 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0033555"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0032501",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0035187"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0032501",
"pred": "is_a",
Expand Down Expand Up @@ -30627,6 +30622,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0071684"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0032502",
"pred": "http://purl.obolibrary.org/obo/BFO_0000050",
"sub": "http://purl.obolibrary.org/obo/GO_0048589"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0032502",
"pred": "http://purl.obolibrary.org/obo/RO_0002211",
Expand Down Expand Up @@ -41160,7 +41160,7 @@
{
"obj": "http://purl.obolibrary.org/obo/GO_0051239",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0046662"
"sub": "http://purl.obolibrary.org/obo/GO_0050795"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051239",
Expand Down Expand Up @@ -41242,6 +41242,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0046622"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051240",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0048520"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051240",
"pred": "is_a",
Expand Down Expand Up @@ -41277,21 +41282,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0110110"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051240",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_1901046"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051240",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_1901248"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051240",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_1902437"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051240",
"pred": "is_a",
Expand Down Expand Up @@ -41437,6 +41432,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0046621"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051241",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0048521"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051241",
"pred": "is_a",
Expand Down Expand Up @@ -41472,11 +41472,6 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_0110111"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051241",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_1901045"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051241",
"pred": "is_a",
Expand All @@ -41487,11 +41482,6 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_1901343"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051241",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/GO_1902436"
},
{
"obj": "http://purl.obolibrary.org/obo/GO_0051241",
"pred": "is_a",
Expand Down Expand Up @@ -95736,6 +95726,18 @@
}
]
},
{
"definedClassId": "http://purl.obolibrary.org/obo/GO_0048589",
"genusIds": [
"http://purl.obolibrary.org/obo/GO_0040007"
],
"restrictions": [
{
"fillerId": "http://purl.obolibrary.org/obo/GO_0032502",
"propertyId": "http://purl.obolibrary.org/obo/BFO_0000050"
}
]
},
{
"definedClassId": "http://purl.obolibrary.org/obo/GO_0048592",
"genusIds": [
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},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#date",
"val": "24:02:2022 12:50"
"val": "13:04:2022 14:07"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
"val": "FlyBase miscellaneous CV"
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2022-02-24"
"val": "2022-04-13"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/dpo/releases/2022-02-24/dpo-full.json",
"version": "http://purl.obolibrary.org/obo/dpo/releases/2022-04-13/dpo-full.json",
"xrefs": []
},
"nodes": [
Expand Down Expand Up @@ -190424,22 +190426,22 @@
"lbl": "sexual reproduction",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000233",
"val": "https://github.com/geneontology/go-ontology/issues/22929"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val": "biological_process"
}
],
"comments": [
"Note that gametes may come from two organisms or from a single organism in the case of self-fertilizing hermaphrodites, e.g. C. elegans, or self-fertilization in plants. Note also that sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times.",
"Sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times."
],
"definition": {
"val": "A reproduction process that creates a new organism by combining the genetic material of two gametes, which may come from two organisms or from a single organism, in the case of self-fertilizing hermaphrodites, e.g. C. elegans, or self-fertilization in plants. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two gametes join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.",
"val": "A type of reproduction that combines the genetic material of two gametes (such as a sperm or egg cell or fungal spores). The gametes have an haploid genome (with a single set of chromosomes, the product of a meiotic division) and combines with one another to produce a zygote (diploid).",
"xrefs": [
"GOC:jl",
"GOC:kmv",
"GOC:krc",
"GOC:tb",
"ISBN:0387520546",
"Wikipedia:Sexual_reproduction"
]
},
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