Updates for Focal (Ubuntu 20.04) including gcc10 and updated CI

.github/workflows/ubuntu.yml

@@ -0,0 +1,264 @@
+name: Build and Test
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+
+  build:
+    name: ${{ matrix.name }}
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        name: [ "Build Bionic", "Build Focal", "Build Groovy" ]
+        include:
+
+          - name: "Build Bionic"
+            release: bionic
+
+          - name: "Build Focal"
+            release: focal
+
+          - name: "Build Groovy"
+            release: groovy
+
+    steps:
+
+      - name: Check Out Repo 
+        uses: actions/checkout@v2
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v1
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Build and push
+        id: docker_build
+        uses: docker/build-push-action@v2
+        with:
+          context: .
+          file: docker/actions/Dockerfile.actions.${{ matrix.release }}
+          push: true
+          tags: fluidity/actions:${{ matrix.release }}-${{ github.sha }}
+
+  testing:
+
+    name: ${{ matrix.name }}
+    runs-on: ubuntu-latest
+    needs: build
+    if: always()
+
+    strategy:
+      fail-fast: false
+      matrix:
+        name: [ "Unit Bionic", "Short Bionic", "Medium Bionic", "Unit Focal", "Short Focal", "Medium Focal", "Unit Groovy", "Short Groovy", "Medium Groovy" ]
+        include:
+
+          - name: "Unit Bionic"
+            release: bionic
+            command: "make unittest"
+            output: "test_results_unittests.xml"
+
+          - name: "Short Bionic"
+            release: bionic
+            command: "make THREADS=2 test"
+            output: "test_results.xml"
+
+          - name: "Medium Bionic"
+            release: bionic
+            command: "make THREADS=2 mediumtest"
+            output: "test_results_medium.xml"
+
+          - name: "Unit Focal"
+            release: focal
+            command: "make unittest"
+            output: "test_results_unittests.xml"
+
+          - name: "Short Focal"
+            release: focal
+            command: "make THREADS=2 test"
+            output: "test_results.xml"
+
+          - name: "Medium Focal"
+            release: focal
+            command: "make THREADS=2 mediumtest"
+            output: "test_results_medium.xml"
+
+          - name: "Unit Groovy"
+            release: groovy
+            command: "make unittest"
+            output: "test_results_unittests.xml"
+
+          - name: "Short Groovy"
+            release: groovy
+            command: "make THREADS=2 test"
+            output: "test_results.xml"
+
+          - name: "Medium Groovy"
+            release: groovy
+            command: "make THREADS=2 mediumtest"
+            output: "test_results_medium.xml"
+
+    steps:
+
+      - name: ${{ matrix.name }} Testing
+        run: |
+         chmod 777 .
+         docker pull fluidity/actions:${{ matrix.release }}-${{ github.sha }}
+         docker run -v $PWD:/host fluidity/actions:${{ matrix.release }}-${{ github.sha }} /bin/bash -c "${{ matrix.command }} && cp -v tests/${{ matrix.output }} /host/${{ matrix.release }}-${{ matrix.output}}"
+
+      - uses: actions/upload-artifact@v2
+        with:
+          path: ${{ matrix.release }}-${{ matrix.output }}
+          name: tests_xml_outputs
+
+      - name: ${{ matrix.name }} JUnit
+        uses: mikepenz/action-junit-report@v2
+        with:
+          report_paths: ${{ matrix.release }}-${{ matrix.output }}
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          check_name: Test report ${{ matrix.name }}
+          fail_on_failure: true
+
+  longtesting:
+
+    name: longtest-${{ matrix.name }}
+    runs-on: ubuntu-latest
+    needs: build
+    if: always()
+
+    strategy:
+      fail-fast: false
+      matrix:
+        name: [
+               "mphase_tephra_settling_2d_adaptive",
+               "gyre_parallel",
+               "Stokes_square_convection_1e4_vv_p1p1",
+               "Stokes_square_convection_1e4_p1p1_Ra_Test",
+               "Stokes_square_convection_1e4_vv_gauss_p2p1", 
+               "viscous_fs_drunkensailor",
+               "cylinder-3d-drag",
+               "viscosity_2d_p0_adaptive_parallel",
+               "circle-2d-drag",
+               "mphase_tephra_settling_3d",
+               "tidal_diagnostics",
+               "mms_burgers_dg_steady",
+               "mms_ns_p1bp1_steady",
+               "mms_ns_dg_steady_parallel",
+               "mms_burgers_cg_steady",
+               "mms_burgers_cg_structured_steady",
+               "mms_ns_cg_steady_full",
+               "foam_2d_p1dgp2_convergence",
+               "circular_duct_from_rest",
+               "mms_tracer_P1dg_cdg_diff_steady",
+               "mms_tracer_cg_supg_advdiff_steady",
+               "para_eddy",
+               "mms_ns_p1p1stabilised_steady",
+               "lock_exchange_3d",
+               "mms_tracer_p0_adv_steady_conservative",
+               "mms_tracer_cg_advdiff_steady",
+               "gls-MixedLayer",
+               "sphere-3D-drag-Re100",
+               "mms_ns_cg_steady",
+               "mms_tracer_P1dg_br_diff_steady",
+               "mphase_mms_p1dgp2_br",
+               "mphase_mms_p2p1_compressible_ie_heat_transfer",
+               "mphase_mms_p2p1_compressible_ie",
+               "mms_ns_p0p1_steady_periodic",
+               "mms_tracer_cv_advdiff_eg_steady",
+               "mms_ns_p1p1stabilised_supg_steady",
+               "sphere-3D-drag-Re1",
+               "mms_tracer_cv_diff_eg_steady",
+               "mms_tracer_cv_diff_steady_structured",
+               "mms_ns_p1lp1cv_steady_compressible",
+               "mphase_mms_p1dgp2_cdg",
+               "mms_tracer_cv_diff_steady",
+               "mms_tracer_p0_adv_steady",
+               "mms_ns_p0p1cv_steady_periodic",
+               "mphase_mms_p2p1_no_interactions",
+               "mms_ns_dg_steady",
+               "mphase_mms_p1dgp2_fpdrag",
+               "mms_tracer_cv_advdiff_steady",
+               "sphere-3D-drag-Re10",
+               "wetting_and_drying_thacker_dg_parallel",
+               "flow_past_sphere_Re1",
+               "flow_past_sphere_Re10",
+               "flow_past_sphere_Re100",
+               "particle_rayleigh_taylor_mu10",
+               "rotating_channel",
+               "tephra_settling",
+               "top_hat",
+               "water_collapse",
+               "stagnant_conical_island",
+               "lituya_bay_pseudo2dadapt",
+               "pseudo2dadapt_parallel_galerkinproj",
+               "mms_rans_p2p1_keps_linearmomentum_cv",
+               "mms_rans_p2p1_keps_lowRe",
+               "mphase_mms_p2p1_compressible_ie_p1cv_heat_transfer",
+               "mms_ns_p2lp1_steady_compressible",
+               "mphase_mms_p2p1_vfrac",
+               "lock_exchange_3d_dg",
+               "mms_rans_p1dgp2_upw_keps",
+               "mphase_mms_p2p1_compressible_ie_p1cv",
+               "mms_rans_p1dgp2_keps",
+               "open_ocean_deep_convection-parallel",
+               "mms_rans_p2p1_keps_linearmomentum",
+               "Stommel_tracer_advection",
+               "particle_stratified_stable_layer",
+               "spherical_benchmark_free_slip",
+               "spherical_benchmark_free_slip_p2bp1dg",
+               "spherical_benchmark_no_slip",
+               "spherical_benchmark_no_slip_p2bp1dg",
+               "spherical_benchmark_smooth_free_slip",
+               "spherical_benchmark_smooth_no_slip",
+               "backward_facing_step_2d",
+               "explicit-hyperc-shear",
+               "explicit-hyperc-shear-adapt",
+               "explicit-hyperc-superman"
+               ## Tests still failing and in need of fixing
+               #"Stokes_mms_p1dg_p2",
+               #"Stokes_subduction_zone_vanKeken2008_OneA",
+               #"Stokes_subduction_zone_vanKeken2008_TwoB",
+               #"coarse-corner",
+               #"gls-StationPapa",
+               #"lagrangian_detectors_3d_2e5",
+               #"lock_exchange",
+               #"lock_exchange_2d_Lagrangian_paths",
+               #"lock_exchange_3d_parallel",
+               #"medp1dgp2",
+               #"particle_entrainment_of_dense_layer",
+               #"saltfinger2d_adaptive",
+               #"square-convection-1e6",
+               #"wetting_and_drying_balzano1_dg_parallel"
+               #"hokkaido-nansei-oki_tsunami"
+               #"driven_cavity",
+              ]
+
+    steps:
+
+      - name: ${{ matrix.name }} Longtesting
+        run: |
+         chmod 777 .
+         docker pull fluidity/actions:focal-${{ github.sha }}
+         docker run -v $PWD:/host fluidity/actions:focal-${{ github.sha }} /bin/bash -c "git clone https://github.com/fluidityproject/longtests && bin/testharness -x test_results_${{ matrix.name }}.xml -f ${{ matrix.name }}.xml && cp -v test_results_${{ matrix.name }}.xml /host"
+
+      - uses: actions/upload-artifact@v2
+        with:
+          path: test_results_${{ matrix.name }}.xml
+          name: tests_xml_outputs
+
+      - name: ${{ matrix.name }} JUnit
+        uses: mikepenz/action-junit-report@v2
+        with:
+          report_paths: test_results_${{ matrix.name }}.xml
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          check_name: Longtest report ${{ matrix.name }}
+          fail_on_failure: true