feat: CQDG-27 variants and genes suggestions (#176)

* feat: CQDG-27 variants and genes suggestions * fix: CQDG-27 fix bug * fix: CQDG-27 review comments
Ferlab-Ste-Justine · Nov 3, 2023 · e269240 · e269240
1 parent c8561b5
commit e269240
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Showing 4 changed files with 11 additions and 5 deletions.
diff --git a/src/graphql/genes/queries.ts b/src/graphql/genes/queries.ts
@@ -2,7 +2,7 @@ import { gql } from '@apollo/client';
 
 export const CHECK_GENE_MATCH_QUERY = gql`
   query CheckGenesMatch($sqon: JSON, $first: Int, $offset: Int) {
-    Genes {
+    Gene {
       hits(filters: $sqon, first: $first, offset: $offset) {
         edges {
           node {

diff --git a/src/utils/translation.ts b/src/utils/translation.ts
@@ -285,7 +285,6 @@ export const getFacetsDictionary = () => ({
   biospecimen_id: intl.get('entities.biospecimen.biospecimen_id'),
   file_id: intl.get('entities.file.file_id'),
   file_2_id: intl.get('entities.file.file_id'),
-  locus: intl.get('entities.variant.variant_id'),
   participant_id: intl.get('entities.participant.participant_id'),
   participant_2_id: intl.get('entities.participant.participant_id'),
   sample_id: intl.get('entities.biospecimen.sample_id'),
@@ -353,6 +352,7 @@ export const getFacetsDictionary = () => ({
   },
   variant_class: intl.get('entities.variant.variant_class'),
   variant_external_reference: intl.get('entities.variant.variant_external_reference'),
+  locus: intl.get('entities.variant.variant_id'),
   consequences: {
     consequence: intl.get('entities.variant.consequences.consequence'),
     consequences: intl.get('entities.variant.consequences.consequences'),
@@ -369,6 +369,7 @@ export const getFacetsDictionary = () => ({
     },
   },
   genes: {
+    symbol: intl.get('entities.variant.gene'),
     consequences: {
       consequence: intl.get('entities.variant.consequences.consequence'),
       consequences: intl.get('entities.variant.consequences.consequences'),

diff --git a/src/views/Variants/components/GeneUploadIds/index.tsx b/src/views/Variants/components/GeneUploadIds/index.tsx
@@ -96,7 +96,7 @@ const GenesUploadIds = ({ queryBuilderId }: IGenesUploadIdsProps) => (
         },
       });
 
-      const genes: IGeneEntity[] = hydrateResults(response.data?.data?.genes?.hits?.edges || []);
+      const genes: IGeneEntity[] = hydrateResults(response.data?.data?.Gene?.hits?.edges || []);
 
       return genes?.flatMap((gene) => {
         const matchedIds: string[] = ids.filter((id: string) => {
@@ -130,7 +130,7 @@ const GenesUploadIds = ({ queryBuilderId }: IGenesUploadIdsProps) => (
         value: uniqueMatches.map((match) => match.mappedTo),
         index: INDEXES.VARIANT,
         merge_strategy: MERGE_VALUES_STRATEGIES.APPEND_VALUES,
-        isUploadedList: true,
+        overrideValuesName: intl.get('components.uploadIds.pillTitle'),
       });
     }}
   />

diff --git a/src/views/Variants/components/PageContent/index.tsx b/src/views/Variants/components/PageContent/index.tsx
@@ -182,7 +182,12 @@ const PageContent = ({ variantMapping }: IPageContentProps) => {
             );
           },
           selectedFilterContent: selectedFilterContent,
-          blacklistedFacets: ['consequences.symbol', 'consequences.symbol_id_1', 'locus'],
+          blacklistedFacets: [
+            'consequences.symbol',
+            'consequences.symbol_id_1',
+            'locus',
+            'genes.symbol',
+          ],
         }}
         enableCombine
         enableShowHideLabels
-Original file line number
+Diff line change
@@ Expand Up / @@ -2,7 +2,7 @@ import { gql } from '@apollo/client'; @@
     export const CHECK_GENE_MATCH_QUERY = gql`
       query CheckGenesMatch($sqon: JSON, $first: Int, $offset: Int) {
-        Genes {
+        Gene {
           hits(filters: $sqon, first: $first, offset: $offset) {
             edges {
               node {
@@ Expand Down @@