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fix: CLIN-2947 make resume work again #36

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Oct 21, 2024
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fix: CLIN-2947 make resume work again #36

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2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -12,7 +12,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Fixed`
- [#35](https://github.com/Ferlab-Ste-Justine/Post-processing-Pipeline/pull/35) Fix incorrect assumption about assets folder location in github ci workflow

- [#36](https://github.com/Ferlab-Ste-Justine/Post-processing-Pipeline/pull/36) Fix variable input in process BCFTOOLS_NORM causing resume problems

## v2.0.0dev

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3 changes: 1 addition & 2 deletions subworkflows/local/exclude_mnps/main.nf
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Expand Up @@ -17,8 +17,7 @@ workflow EXCLUDE_MNPS {

def ch_bcftoolsfilter_for_bcftoolsnorm = BCFTOOLS_FILTER.out.vcf.join(BCFTOOLS_FILTER.out.tbi)

ch_reference = input.map{meta,file -> [meta,reference_path]}
BCFTOOLS_NORM(ch_bcftoolsfilter_for_bcftoolsnorm,ch_reference)
BCFTOOLS_NORM(ch_bcftoolsfilter_for_bcftoolsnorm, [[:], reference_path])
ch_output_excludemnps = BCFTOOLS_NORM.out.vcf.join(BCFTOOLS_NORM.out.tbi)
.map{meta, vcf, tbi ->[meta,[vcf,tbi]]}

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