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Hard X-ray Nanofocus Single-Particle Diffractive Imaging of DNA-Origami Molecular Scaffolds at the SFX/SPB instrument

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xfel7927

Data analysis for the SPB/SFX experiment "xfel7927"

Files

Experiment root  : /gpfs/exfel/exp/SPB/202405/p007927
AGIPD Data       : /gpfs/exfel/exp/SPB/202405/p007927/raw/r*/RAW*AGIPD*.h5
Meta  Data       : /gpfs/exfel/exp/SPB/202405/p007927/raw/r*/RAW*DA*.h5
AGIPD (corrected): /gpfs/exfel/exp/SPB/202405/p007927/proc/r*/COR*AGIPD*.h5
Analysis scripts : /gpfs/exfel/exp/SPB/202405/p007927/usr/Shared/<user>/
Analysis files   : /gpfs/exfel/exp/SPB/202405/p007927/scratch/<user>/

Pipeline

XFEL Data (/raw)
   └► facility calibrations (/proc/r*/CORR*)           
   └► per-cell powder (/scratch/powder/r*_powder.h5)           
     └► per-cell mask  (/scratch/det/r*_mask.h5)           
        └► event info (/scratch/events/r*_events.h5)
          └► per-cell per-cell powder hits non-hits (/scratch/powder/r*_powder.h5)
            └► background estimation (events file)
              └► cxi files for hits (/scratch/hits/r*_hits.cxi)
                ├► sizing (cxi file)
                ├► static EMC (/scratch/emc_static/r*_emc_static.h5)
                └► 2D EMC (/scratch/emc_2D/r*_emc_2D.h5)
                  └► classification (write to event info)
                    └► 3D EMC (/scratch/emc_3D/r*_emc_3D.h5)

Scripts

These are located in offline/

XFEL Data (/raw)
   └► facility calibrations (automatically triggered by EuXFEL)           
      └► VDS files (submit_vds.sh)
         └► event info (submit_events.sh)
            └► cxi files for hits (submit_cxi.sh)
               ├► static EMC (...)
               └► 2D EMC (...)
                  └► classification (...)
                     └► 3D EMC (...)

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Hard X-ray Nanofocus Single-Particle Diffractive Imaging of DNA-Origami Molecular Scaffolds at the SFX/SPB instrument

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