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initial attempt to recompress dicom #33

initial attempt to recompress dicom

initial attempt to recompress dicom #33

Workflow file for this run

# Continuous integration testing for ChRIS Plugin.
# https://github.com/FNNDSC/python-chrisapp-template/wiki/Continuous-Integration
#
# - on push and PR: run pytest
# - on push to main: build and push container images as ":latest"
# - on push to semver tag: build and push container image with tag and
# upload plugin description to https://chrisstore.co
name: build
on:
push:
branches: [ main ]
tags:
- "v?[0-9]+.[0-9]+.[0-9]+*"
pull_request:
branches: [ main ]
jobs:
test:
name: Unit tests
runs-on: ubuntu-22.04
steps:
- uses: actions/checkout@v3
- uses: docker/setup-buildx-action@v2
- name: Cache Docker layers
uses: actions/cache@v3
with:
path: /tmp/.buildx-cache
key: ${{ runner.os }}-buildx-${{ github.sha }}
restore-keys: |
${{ runner.os }}-buildx-
- name: Build
uses: docker/build-push-action@v3
with:
build-args: extras_require=dev
context: .
load: true
push: false
tags: "localhost/local/app:dev"
cache-from: type=local,src=/tmp/.buildx-cache
cache-to: type=local,dest=/tmp/.buildx-cache
- name: Run pytest
run: |
docker run -v "$GITHUB_WORKSPACE:/app:ro" -w /app localhost/local/app:dev \
pytest -o cache_dir=/tmp/pytest
build:
name: Build
if: github.event_name == 'push' || github.event_name == 'release'
# needs: [ test ] # uncomment to require passing tests
runs-on: ubuntu-22.04
# A local registry helps us reuse the built image between steps
services:
registry:
image: registry:2
ports:
- 5000:5000
steps:
- name: Get git tag
id: git_info
if: startsWith(github.ref, 'refs/tags/')
run: echo "tag=${GITHUB_REF##*/}" >> $GITHUB_OUTPUT
- name: Get project info
id: determine
env:
git_tag: ${{ steps.git_info.outputs.tag }}
run: |
repo="${GITHUB_REPOSITORY,,}" # to lower case
# if build triggered by tag, use tag name
tag="${git_tag:-latest}"
# if tag is a version number prefixed by 'v', remove the 'v'
if [[ "$tag" =~ ^v[0-9].* ]]; then
tag="${tag:1}"
fi
dock_image=$repo:$tag
echo $dock_image
echo "dock_image=$dock_image" >> $GITHUB_OUTPUT
echo "repo=$repo" >> $GITHUB_OUTPUT
- uses: actions/checkout@v3
# QEMU is used for non-x86_64 builds
- uses: docker/setup-qemu-action@v2
# buildx adds additional features to docker build
- uses: docker/setup-buildx-action@v2
with:
driver-opts: network=host
# cache slightly improves rebuild time
- name: Cache Docker layers
uses: actions/cache@v3
with:
path: /tmp/.buildx-cache
key: ${{ runner.os }}-buildx-${{ github.sha }}
restore-keys: |
${{ runner.os }}-buildx-
- name: Login to DockerHub
id: dockerhub_login
uses: docker/login-action@v2
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Login to GitHub Container Registry
uses: docker/login-action@v2
with:
registry: ghcr.io
username: ${{ github.repository_owner }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Build and push
uses: docker/build-push-action@v3
id: docker_build
with:
context: .
file: ./Dockerfile
tags: |
localhost:5000/${{ steps.determine.outputs.dock_image }}
docker.io/${{ steps.determine.outputs.dock_image }}
ghcr.io/${{ steps.determine.outputs.dock_image }}
# if non-x86_84 architectures are supported, add them here
platforms: linux/amd64 #,linux/arm64,linux/ppc64le
push: true
cache-from: type=local,src=/tmp/.buildx-cache
cache-to: type=local,dest=/tmp/.buildx-cache
- name: Get plugin meta
id: pluginmeta
run: |
repo=${{ steps.determine.outputs.repo }}
dock_image=${{ steps.determine.outputs.dock_image }}
docker run --rm localhost:5000/$dock_image chris_plugin_info > /tmp/description.json
jq < /tmp/description.json # pretty print in log
echo "title=$(jq -r '.title' < /tmp/description.json)" >> $GITHUB_OUTPUT
- name: Update DockerHub description
uses: peter-evans/dockerhub-description@v3
continue-on-error: true # it is not crucial that this works
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
short-description: ${{ steps.pluginmeta.outputs.title }}
readme-filepath: ./README.md
repository: ${{ steps.determine.outputs.repo }}
- name: Upload to ChRIS Store
if: steps.git_info.outcome != 'skipped'
uses: FNNDSC/chrisstore-action@master
with:
descriptor_file: /tmp/description.json
auth: ${{ secrets.CHRIS_STORE_USER }}