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# TODO ADD PIXI | ||
name: Release | ||
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on: | ||
push: | ||
branches: [ main ] | ||
paths: | ||
- 'version.txt' | ||
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jobs: | ||
build: | ||
name: Build | ||
runs-on: ubuntu-24.04 | ||
strategy: | ||
fail-fast: true | ||
matrix: | ||
name: | ||
- python | ||
- python-async | ||
steps: | ||
- name: Checkout | ||
uses: actions/checkout@v4 | ||
- name: Install build | ||
run: pip install --break-system-packages build | ||
- name: Build dist | ||
run: python -m build ${{ matrix.name }} | ||
- name: Store the distribution packages | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: ${{ matrix.name }} | ||
path: ${{ matrix.name }}/dist/ | ||
publish: | ||
name: Publish | ||
runs-on: ubuntu-24.04 | ||
needs: build | ||
steps: | ||
- name: Download distributions packages | ||
uses: actions/download-artifact@v4 | ||
with: | ||
path: dist | ||
pattern: python* | ||
merge-multiple: true | ||
- name: Parse PEP 508 requirement strings | ||
id: requirements | ||
run: | | ||
find dist -type f -name '*.whl' -printf "%f\n" \ | ||
| sed 's/-py3-none-any.whl//' \ | ||
| sed 's/-/==/' \ | ||
| xargs -I '%' bash -c 'echo "$(sed "s/==.*//" <<< %)=%"' \ | ||
| tee -a "$GITHUB_OUTPUT" | ||
- name: Assert PEP 508 requirement strings are not empty | ||
run: | | ||
if [ -z '${{ steps.requirements.outputs.chris_oag}}' ]; then | ||
echo "::error ::steps.requirements.outputs.chris_oag is empty" | ||
exit 1 | ||
fi | ||
if [ -z '${{ steps.requirements.outputs.aiochris_oag}}' ]; then | ||
echo "::error ::steps.requirements.outputs.aiochris_oag is empty" | ||
exit 1 | ||
fi | ||
- name: Publish package distributions to PyPI | ||
uses: pypa/gh-action-pypi-publish@release/v1 | ||
with: | ||
# TODO change to prod PyPI | ||
repository-url: https://test.pypi.org/legacy/ | ||
password: '${{ secrets.TEST_PYPI_TOKEN }}' | ||
# password: '${{ secrets.PYPI_API_TOKEN }}' | ||
outputs: | ||
pep508_chris_oag: ${{ steps.requirements.outputs.chris_oag }} | ||
pep508_aiochris_oag: ${{ steps.requirements.outputs.aiochris_oag }} | ||
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oci-image: | ||
name: Push OCI Image | ||
runs-on: ubuntu-24.04 | ||
needs: build | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
name: | ||
- python | ||
- python-async | ||
outputs: | ||
python-image: ${{ steps.info.outputs.python-image }} | ||
python-version: ${{ steps.info.outputs.python-version }} | ||
python-async-image: ${{ steps.info.outputs.python-async-image }} | ||
python-async-version: ${{ steps.info.outputs.python-async-version }} | ||
steps: | ||
- name: Download distributions packages | ||
uses: actions/download-artifact@v4 | ||
with: | ||
name: ${{ matrix.name }} | ||
path: dist | ||
- name: Create Dockerfile | ||
run: | | ||
tee Dockerfile << EOF | ||
FROM docker.io/library/python:3.12.7-alpine3.20 | ||
RUN --mount=source=dist,target=/dist PYTHONDONTWRITEBYTECODE=1 pip install --no-cache-dir /dist/*.whl | ||
EOF | ||
- name: Get version | ||
id: info | ||
run: | | ||
version="$( | ||
find dist -type f -name '*.whl' -printf "%f\n" \ | ||
| head -n 1 \ | ||
| grep -Eom 1 '[[:digit:]]+\.[[:digit:]]+\.[[:digit:]]+(a|b)*[[:digit:]]*' | ||
)" | ||
image='ghcr.io/${{ github.repository_owner }}/${{ matrix.name }}-client' | ||
image="${image,,}" | ||
tee -a "$GITHUB_OUTPUT" << EOF | ||
version=$version | ||
${{ matrix.name }}-version=$version | ||
image=$image | ||
${{ matrix.name }}-image=$image | ||
EOF | ||
- name: Docker meta | ||
id: meta | ||
uses: docker/metadata-action@v5 | ||
with: | ||
images: ${{ steps.info.outputs.image }} | ||
tags: | | ||
type=semver,pattern={{version}} | ||
type=raw,value=${{ steps.info.outputs.version }} | ||
type=raw,value=latest,enable={{is_default_branch}} | ||
- name: Login to GitHub Container Registry | ||
uses: docker/login-action@v3 | ||
with: | ||
registry: ghcr.io | ||
username: ${{ github.repository_owner }} | ||
password: ${{ secrets.GITHUB_TOKEN }} | ||
- uses: docker/setup-qemu-action@v3 | ||
- uses: docker/setup-buildx-action@v3 | ||
- name: Build and push | ||
uses: docker/build-push-action@v6 | ||
with: | ||
push: true | ||
context: . | ||
file: ./Dockerfile | ||
platforms: linux/amd64,linux/arm64 | ||
tags: ${{ steps.meta.outputs.tags }} | ||
labels: ${{ steps.meta.outputs.labels }} | ||
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gh-release: | ||
name: Create GitHub Release | ||
runs-on: ubuntu-24.04 | ||
needs: | ||
- oci-image | ||
- publish | ||
steps: | ||
- name: Checkout | ||
uses: actions/checkout@v4 | ||
with: | ||
sparse-checkout: version.txt | ||
sparse-checkout-cone-mode: false | ||
- name: Get version | ||
id: version | ||
run: echo "version=$(< version.txt)" >> "$GITHUB_OUTPUT" | ||
- uses: softprops/action-gh-release@v2 | ||
with: | ||
draft: false | ||
prerelease: ${{ contains(steps.version.outputs.version, '-') }} | ||
name: ChRIS Clients - version ${{ steps.version.outputs.version }} | ||
body: | | ||
## Python Async Client | ||
```shell | ||
# using uv - https://docs.astral.sh/uv/ | ||
uv pip install ${{ needs.publish.outputs.pep508_aiochris_oag }} | ||
# using rye - https://rye.astral.sh/ | ||
rye add ${{ needs.publish.outputs.pep508_aiochris_oag }} | ||
# using pip | ||
pip install ${{ needs.publish.outputs.pep508_aiochris_oag }} | ||
# using Docker | ||
docker pull ${{ needs.oci-image.outputs.python-async-image }}:${{ needs.oci-image.outputs.python-async-version }} | ||
# using Podman | ||
docker pull ${{ needs.oci-image.outputs.python-async-image }}:${{ needs.oci-image.outputs.python-async-version }} | ||
``` | ||
## Python urllib3 Client | ||
```shell | ||
# using uv - https://docs.astral.sh/uv/ | ||
uv pip install ${{ needs.publish.outputs.pep508_chris_oag }} | ||
# using rye - https://rye.astral.sh/ | ||
rye add ${{ needs.publish.outputs.pep508_chris_oag }} | ||
# using pip | ||
pip install ${{ needs.publish.outputs.pep508_chris_oag }} | ||
# using Docker | ||
docker pull ${{ needs.oci-image.outputs.python-image }}:${{ needs.oci-image.outputs.python-version }} | ||
# using Podman | ||
docker pull ${{ needs.oci-image.outputs.python-image }}:${{ needs.oci-image.outputs.python-version }} | ||
``` |
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/schema*.yaml | ||
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/.venv | ||
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dist | ||
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# OpenAPI Generated Clients for _CUBE_ | ||
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This repository contains client libraries for the [_ChRIS_ backend](https://github.com/fnndsc/ChRIS_ultron_backEnd) | ||
created using the [OpenAPI generator](https://openapi-generator.tech/). | ||
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file := "schema_split.yaml" | ||
releases_url := "https://github.com/FNNDSC/ChRIS_ultron_backEnd/releases" | ||
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generate-all: | ||
@just generate python -g python -p packageName=chris_oag,projectName=chris-oag -p library=urllib3,packageVersion=$(just get-version-pep440) | ||
@just generate python-async -g python -p packageName=aiochris_oag,projectName=aiochris-oag -p library=asyncio,packageVersion=$(just get-version-pep440) | ||
# @just generate typescript-fetch -g typescript-fetch -p npmName=@fnndsc/chris-openapi-generated -p withInterfaces=true | ||
# @just generate rust -g rust -p packageName=chris-openapi-generated -p library=reqwest,preferUnsignedInt=true,supportMiddleware=true | ||
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# generate an OpenAPI client | ||
generate output +options: | ||
@if ! [ -e "{{file}}" ]; then \ | ||
error="$(tput setaf 1)error$(tput sgr0): {{file}} not found."; \ | ||
suggestion="Please download the OpenAPI specification YAML from {{releases_url}} and save it as $(pwd)/{{file}}"; \ | ||
echo "$error $suggestion"; \ | ||
exit 1; \ | ||
fi | ||
if ! [ -d {{output}} ]; then mkdir -v {{output}}; fi | ||
podman run --rm --userns=keep-id:uid=100100,gid=100100 -u 100100:100100 \ | ||
-v "$(pwd)/{{output}}:/out:rw" -v "$(pwd)/{{file}}:/{{file}}:ro" \ | ||
docker.io/openapitools/openapi-generator-cli:v7.8.0 \ | ||
generate {{options}} -i "/{{file}}" -o "/out" | ||
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get-version-pep440: | ||
@./semver2pep440.sh < version.txt | ||
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get-version: | ||
@cat version.txt | ||
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# NOTE: This file is auto generated by OpenAPI Generator. | ||
# URL: https://openapi-generator.tech | ||
# | ||
# ref: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | ||
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name: aiochris_oag Python package | ||
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on: [push, pull_request] | ||
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jobs: | ||
build: | ||
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runs-on: ubuntu-latest | ||
strategy: | ||
matrix: | ||
python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | ||
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steps: | ||
- uses: actions/checkout@v3 | ||
- name: Set up Python ${{ matrix.python-version }} | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: ${{ matrix.python-version }} | ||
- name: Install dependencies | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install flake8 pytest | ||
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | ||
if [ -f test-requirements.txt ]; then pip install -r test-requirements.txt; fi | ||
- name: Lint with flake8 | ||
run: | | ||
# stop the build if there are Python syntax errors or undefined names | ||
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | ||
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | ||
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | ||
- name: Test with pytest | ||
run: | | ||
pytest |
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# Byte-compiled / optimized / DLL files | ||
__pycache__/ | ||
*.py[cod] | ||
*$py.class | ||
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# C extensions | ||
*.so | ||
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# Distribution / packaging | ||
.Python | ||
env/ | ||
build/ | ||
develop-eggs/ | ||
dist/ | ||
downloads/ | ||
eggs/ | ||
.eggs/ | ||
lib/ | ||
lib64/ | ||
parts/ | ||
sdist/ | ||
var/ | ||
*.egg-info/ | ||
.installed.cfg | ||
*.egg | ||
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# PyInstaller | ||
# Usually these files are written by a python script from a template | ||
# before PyInstaller builds the exe, so as to inject date/other infos into it. | ||
*.manifest | ||
*.spec | ||
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# Installer logs | ||
pip-log.txt | ||
pip-delete-this-directory.txt | ||
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# Unit test / coverage reports | ||
htmlcov/ | ||
.tox/ | ||
.coverage | ||
.coverage.* | ||
.cache | ||
nosetests.xml | ||
coverage.xml | ||
*,cover | ||
.hypothesis/ | ||
venv/ | ||
.venv/ | ||
.python-version | ||
.pytest_cache | ||
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# Translations | ||
*.mo | ||
*.pot | ||
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# Django stuff: | ||
*.log | ||
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# Sphinx documentation | ||
docs/_build/ | ||
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# PyBuilder | ||
target/ | ||
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#Ipython Notebook | ||
.ipynb_checkpoints |
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# NOTE: This file is auto generated by OpenAPI Generator. | ||
# URL: https://openapi-generator.tech | ||
# | ||
# ref: https://docs.gitlab.com/ee/ci/README.html | ||
# ref: https://gitlab.com/gitlab-org/gitlab/-/blob/master/lib/gitlab/ci/templates/Python.gitlab-ci.yml | ||
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stages: | ||
- test | ||
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.pytest: | ||
stage: test | ||
script: | ||
- pip install -r requirements.txt | ||
- pip install -r test-requirements.txt | ||
- pytest --cov=aiochris_oag | ||
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pytest-3.7: | ||
extends: .pytest | ||
image: python:3.7-alpine | ||
pytest-3.8: | ||
extends: .pytest | ||
image: python:3.8-alpine | ||
pytest-3.9: | ||
extends: .pytest | ||
image: python:3.9-alpine | ||
pytest-3.10: | ||
extends: .pytest | ||
image: python:3.10-alpine | ||
pytest-3.11: | ||
extends: .pytest | ||
image: python:3.11-alpine |
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