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Bulk RNA-seq pipeline UCloud/Slurm 1.1

  • The pipeline evaluates first strandedness using RSeQC (infer_experiment.py) and based on the results it automatically proceeds accordingly, i.e. reverse-stranded, forward-stranded or non-stranded setups. Tools strandness aware include Qualimap RNA-SeQC and featureCounts.

Bulk RNA-seq pipeline UCloud/Slurm 1.0

  • Initial release of bulk-RNA-seq pipeline