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@FGM-SDU

Functional Genomics & Metabolism Research Unit

We use advanced genomic tools to understand the transcriptional plasticity and regulatory networks involved in differentiation, metabolism and diseases.

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  1. Pipeline-bulk-RNA-seq_ucloud Pipeline-bulk-RNA-seq_ucloud Public

    This pipeline facilitates the analysis of bulk RNA-seq data in UCloud HPC using Ubuntu-Terminal with Slurm workload manager

    Shell 2 1

  2. sRNA-seq_miRNA sRNA-seq_miRNA Public

    This repository contains guides for processing of small RNA-seq data within UCloud-FGM @ SDU.

    Shell 1 1

  3. Pipeline-bulk-ATAC-seq_ucloud Pipeline-bulk-ATAC-seq_ucloud Public

    This pipeline facilitates the analysis of bulk ATAC-seq data in UCloud HPC using Ubuntu-Terminal with Slurm workload manager

    Shell

  4. SRA_download SRA_download Public

    accessing and processing public genomic data from the Sequence Read Archive (SRA) using Slurm and SRA-Toolkit in UCloud-HPC

    Shell

Repositories

Showing 4 of 4 repositories
  • sRNA-seq_miRNA Public

    This repository contains guides for processing of small RNA-seq data within UCloud-FGM @ SDU.

    FGM-SDU/sRNA-seq_miRNA’s past year of commit activity
    Shell 1 MIT 1 0 1 Updated Aug 28, 2024
  • Pipeline-bulk-RNA-seq_ucloud Public

    This pipeline facilitates the analysis of bulk RNA-seq data in UCloud HPC using Ubuntu-Terminal with Slurm workload manager

    FGM-SDU/Pipeline-bulk-RNA-seq_ucloud’s past year of commit activity
    Shell 2 MIT 1 0 0 Updated Jul 26, 2024
  • SRA_download Public

    accessing and processing public genomic data from the Sequence Read Archive (SRA) using Slurm and SRA-Toolkit in UCloud-HPC

    FGM-SDU/SRA_download’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jun 11, 2024
  • Pipeline-bulk-ATAC-seq_ucloud Public

    This pipeline facilitates the analysis of bulk ATAC-seq data in UCloud HPC using Ubuntu-Terminal with Slurm workload manager

    FGM-SDU/Pipeline-bulk-ATAC-seq_ucloud’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated May 17, 2024

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